Skills from K-Dense’s repositories that passed our trust, licence and security gates. Each keeps its author’s attribution.
| Repository | Tier | Verdict | Authorship | Checked | Skills |
|---|---|---|---|---|---|
| K-Dense-AI/claude-scientific-writer | Project | Approved · created 2025-10-27, pushed 2026-11-07, 2559 stars | Written in-house | 2026-11-07 | 26 |
| K-Dense-AI/scientific-agent-skills | Project | Approved · created 2025-10-19, pushed 2026-11-02, 56393 stars | Written in-house | 2026-11-07 | 177 |
Files are mirrored only where the licence allows redistribution; otherwise we link to the source.
K-Dense· Community
A toolkit for processing and visualizing high-throughput sequencing data including ChIP-seq, RNA-seq, and ATAC-seq.
K-Dense· Community
Manage, version, and reproduce scientific datasets and computational workflows using DataLad and git-annex.
K-Dense· Community
A comprehensive workflow for processing bulk RNA-seq data from raw FASTQ files to gene-level counts ready for differential expression analysis.
K-Dense· Community
A structured framework for planning, executing, and documenting the validation, verification, and transfer of analytical procedures.
K-Dense· Community
A systematic framework for evaluating scientific rigor, experimental methodology, and evidence quality.
K-Dense· Community
A Python framework for solving single, multi, and many-objective optimization problems using evolutionary algorithms.
K-Dense· Community
A Python library for creating publication-quality statistical graphics with integrated pandas support.
K-Dense· Community
Compute multivariate RELSA severity scores and generate exploratory ARIMA forecasts for laboratory animal welfare studies.
K-Dense· Community
Search 18 scholarly databases for papers, preprints, citations, and full-text access with reproducible provenance.
K-Dense· Community
Estimate intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing data using validated atom maps and constrained optimization.
K-Dense· Community
Version-aware guidance for PufferLib reinforcement learning environments, vectorization, policies, and training.
K-Dense· Community
Generate professional, data-driven infographics using AI-powered creation, quality review, and optional automated research.
K-Dense· Community
A Python toolkit for biological sequence analysis, phylogenetics, and microbial ecology data.
K-Dense· Community
A toolkit for local computational pathology research, supporting slide processing, multiplex quantification, and spatial graph construction.
K-Dense· Community
Automate custom part manufacturing on Fictiv, from CAD upload and DFM feedback to quoting and order placement.
K-Dense· Community
Processes large tabular scientific datasets with Vaex expressions, filtered views, streamed statistics, binned visualizations, and file conversion. Use for larger-than-RAM HDF5, Arrow, CSV, or Parquet analysis, virtual feature engineering, or Vaex ML preprocessing; distinguishes these operations from estimators and conversions that materialize data.
K-Dense· Community
Infers candidate gene regulatory networks from expression data using GRNBoost2 and GENIE3 algorithms.
K-Dense· Community
A comprehensive workflow for performing and interpreting pathway and gene-set enrichment analysis on genomic data.
K-Dense· Community
Extract and preprocess whole-slide histology image tiles for research workflows using Histolab.
K-Dense· Community
A structured multi-perspective deliberation exercise for complex decision-making and research trade-offs.
K-Dense· Community
An exploratory rubric for annotating reasoning and rhetorical patterns in text using the DHDNA framework.
K-Dense· Community
Builds, evaluates, and audits survival analysis workflows for right-censored and competing-risk data using scikit-survival.
K-Dense· Community
Analyze Cancer Dependency Map (DepMap) data to identify gene dependencies, co-essentiality, and biomarker associations in cancer models.
K-Dense· Community
Automates the preparation and execution of nf-core/pacsomatic matched tumor-normal PacBio HiFi genomics workflows.