Genomics Workflow Acceleration — Agent Skill by NVIDIA

From the author

Use when accelerating existing genomics workflows with NVIDIA Parabricks, improving runtime or price/performance, converting pipeline steps to GPUs, or comparing CPU and GPU workflow outputs. Adds optional GPU steps in-place with runtime toggles (default off). Do NOT use for individual pbrun command routing — use parabricks.

— the description by NVIDIA

Install

Get the skill from its source (we cannot redistribute it):
https://github.com/NVIDIA/skills/tree/fce3cca4170be75e82c64920654d56ee2811b005/skills/bionemo-genomics-workflow-acceleration

Documentation by NVIDIA

The licence of this skill does not allow us to copy its documentation. Read it at the source

Files

BENCHMARK.md(opens on GitHub)Not mirrored: opens on GitHub7.7 KiB
SKILL.md(opens on GitHub)Not mirrored: opens on GitHub13.0 KiB
evals/evals.json(opens on GitHub)Not mirrored: opens on GitHub5.4 KiB
references/comparison-checklist.md(opens on GitHub)Not mirrored: opens on GitHub2.0 KiB
references/nf-core-parabricks-map.md(opens on GitHub)Not mirrored: opens on GitHub2.9 KiB
references/parabricks-runtime-readiness.md(opens on GitHub)Not mirrored: opens on GitHub2.5 KiB
references/parabricks-tool-map.md(opens on GitHub)Not mirrored: opens on GitHub2.5 KiB
references/step-consolidation.md(opens on GitHub)Not mirrored: opens on GitHub3.5 KiB
references/workflow-frameworks.md(opens on GitHub)Not mirrored: opens on GitHub4.8 KiB
references/workflow-layout.md(opens on GitHub)Not mirrored: opens on GitHub3.3 KiB
skill-card.md(opens on GitHub)Not mirrored: opens on GitHub5.5 KiB
skill.oms.sig(opens on GitHub)Not mirrored: opens on GitHub6.2 KiB

Requirements and compatibility

Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta

“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.

Security

What our scanner noticed· Medium risk

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