Openfold2 Nim — Agent Skill by NVIDIA

From the author

Use this skill for OpenFold2, NVIDIA's BioNeMo NIM microservice for monomer protein structure prediction. Invoke whenever the user mentions OpenFold2, AlphaFold2-like monomer folding, protein sequence-to-structure prediction, A3M MSAs, mmCIF templates, hosted NVIDIA API calls, or local Docker deployment.

— the description by NVIDIA

Install

Get the skill from its source (we cannot redistribute it):
https://github.com/NVIDIA/skills/tree/fce3cca4170be75e82c64920654d56ee2811b005/skills/bionemo-openfold2-nim

Documentation by NVIDIA

The licence of this skill does not allow us to copy its documentation. Read it at the source

Files

BENCHMARK.md(opens on GitHub)Not mirrored: opens on GitHub6.9 KiB
SKILL.md(opens on GitHub)Not mirrored: opens on GitHub7.0 KiB
config/skillspector-baseline.yml(opens on GitHub)Not mirrored: opens on GitHub877 B
evals/config.yml(opens on GitHub)Not mirrored: opens on GitHub117 B
evals/evals.json(opens on GitHub)Not mirrored: opens on GitHub7.3 KiB
evals/trigger_evals.json(opens on GitHub)Not mirrored: opens on GitHub1.9 KiB
references/api.md(opens on GitHub)Not mirrored: opens on GitHub4.4 KiB
references/examples.md(opens on GitHub)Not mirrored: opens on GitHub1.8 KiB
references/parameters.md(opens on GitHub)Not mirrored: opens on GitHub1.8 KiB
references/science.md(opens on GitHub)Not mirrored: opens on GitHub2.9 KiB
references/validation.md(opens on GitHub)Not mirrored: opens on GitHub1.5 KiB
skill-card.md(opens on GitHub)Not mirrored: opens on GitHub4.3 KiB
skill.oms.sig(opens on GitHub)Not mirrored: opens on GitHub6.3 KiB

Requirements and compatibility

Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta

“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.

Needs: Declares allowed tools, Needs network access, Needs an API key, Needs Python

The author says: requests>=2.28

Security

What our scanner noticed· Medium risk

Large base64-encoded blobs
Instructions that use the network

A static scan is not a guarantee. Skills are third-party content: review a skill before you let an agent use it.

Scvi Tools
K-Dense· Community
A toolkit for fitting probabilistic generative models to single-cell omics data, including RNA, ATAC, and multimodal integration.
Science and researchClaude CodeClaude appsOpenAI Codex+14 more
MITLow riskGitHub stars of the source repository56.4k
Onekgpd
K-Dense· Community
Query individual-level genotype data and variants from the 1000 Genomes Project cohort.
Science and researchClaude CodeClaude appsOpenAI Codex+14 more
MITLow riskHas scriptsGitHub stars of the source repository56.4k
Geniml
K-Dense· Community
A toolkit for managing local genomic interval workflows, including BED validation, consensus universe construction, and model planning.
Science and researchClaude CodeClaude appsOpenAI Codex+14 more
MITLow riskHas scriptsGitHub stars of the source repository56.4k
Latchbio Integration
K-Dense· Community
Develop, register, and operate bioinformatics workflows on the Latch platform using the Python SDK and CLI.
Science and researchClaude CodeClaude appsOpenAI Codex+14 more
MITLow riskHas scriptsGitHub stars of the source repository56.4k
Diffdock
K-Dense· Community
Perform protein-small-molecule docking and pose generation using the DiffDock and DiffDock-L models.
Science and researchClaude CodeClaude appsOpenAI Codex+14 more
MITLow riskHas scriptsGitHub stars of the source repository56.4k
Neuropixels Analysis
K-Dense· Community
End-to-end analysis pipeline for Neuropixels extracellular electrophysiology recordings using SpikeInterface.
Science and researchClaude CodeClaude appsOpenAI Codex+14 more
MITLow riskHas scriptsGitHub stars of the source repository56.4k