Ukb Topmed Phewas Skill — Agent Skill by OpenAI

From the author

Fetch compact UKB-TOPMed PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise UKB-TOPMed association results for one variant

— the description by OpenAI

Install

Get the skill from its source (we cannot redistribute it):
https://github.com/openai/plugins/tree/d420d13051bffe4543ed39e30fa46b87148e47dd/plugins/life-science-research/skills/ukb-topmed-phewas-skill

Documentation by OpenAI

The licence of this skill does not allow us to copy its documentation. Read it at the source

Files

SKILL.md(opens on GitHub)Not mirrored: opens on GitHub2.4 KiB
agents/openai.yaml(opens on GitHub)Not mirrored: opens on GitHub107 B
scripts/ukb_topmed_phewas.py(opens on GitHub)ScriptNot mirrored: opens on GitHub7.4 KiB
scripts/variant_resolution.py(opens on GitHub)ScriptNot mirrored: opens on GitHub11.9 KiB

Requirements and compatibility

Written for: OpenAI Codex

Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta

“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.

Needs: Needs Python

Security

What our scanner noticed· Low risk

Scripts that your agent may run

This skill includes scripts that your agent may run. Read them before you use it.

A static scan is not a guarantee. Skills are third-party content: review a skill before you let an agent use it.

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