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Diagramming Code

Trail of BitsOfficialPublished by Trail of Bits

  • Skill
  • Content generator
  • Software development
  • CC-BY-SA-4.0
  • Low risk
  • Has scripts

From the author

Generates Mermaid diagrams from Trailmark code graphs. Produces call graphs, class hierarchies, module dependency maps, containment diagrams, complexity heatmaps, and attack surface data flow visualizations. Use when visualizing code architecture, drawing call graphs, generating class diagrams, creating dependency maps, producing complexity heatmaps, or visualizing data flow and attack surface paths as Mermaid diagrams.
— the description by Trail of Bits

AutoGineer summary

Written by AutoGineer from the skill’s own files, not by the author

This skill provides a systematic way to visualize codebases by converting Trailmark code graph data into Mermaid diagrams. It supports various architectural views, including call graphs, class hierarchies, module dependencies, and complexity heatmaps. By leveraging the underlying graph structure, it ensures accurate representations of code relationships, helping developers identify hotspots, trace data flows, and understand structural dependencies without manual diagramming.

What it does

  • Generates Mermaid call graphs to visualize function invocation paths.
  • Creates class hierarchy and containment diagrams to show structural relationships.
  • Maps module dependencies to clarify project architecture.
  • Produces complexity heatmaps to identify high-risk code areas.
  • Visualizes data flow paths from entrypoints to sensitive functions.
  • Automatically handles node ID sanitization and Mermaid syntax formatting.

When to use it

  • When you need to document or understand the call structure of a specific function.
  • When analyzing the inheritance or composition of classes in a codebase.
  • When identifying high-complexity functions that may require refactoring.
  • When tracing how data moves through an application to assess attack surfaces.
  • When mapping module-level dependencies to simplify project navigation.

Advantages

  • Ensures accuracy by deriving diagrams directly from parsed code graphs.
  • Reduces manual effort in creating and maintaining architectural documentation.
  • Provides consistent styling for complexity and edge confidence levels.
  • Supports focused visualization to prevent cluttered, unreadable diagrams.
  • Integrates seamlessly with Trailmark's analysis capabilities.

Usage examples

“Generate a call graph for the function 'process_payment' in the current directory.”
The agent runs the diagram script with the call-graph type focused on 'process_payment' and returns a Mermaid flowchart.
“Show me a complexity heatmap for the src folder.”
The agent generates a Mermaid flowchart where functions are color-coded by cyclomatic complexity, highlighting high-complexity areas.
“Map the module dependencies for this project.”
The agent produces a Mermaid flowchart showing the import relationships between modules in the target directory.
“Visualize the data flow from entrypoints to the 'authenticate' function.”
The agent creates a Mermaid diagram tracing the path from system entrypoints to the specified function.

Install

  1. Download the skill as a ZIP:

    https://mp-staging.autogineer.com/agent-skills/trailofbits/diagramming-code/download
  2. Unzip it into the cross-client skills folder of your project:

    mkdir -p .agents/skills && unzip diagramming-code.zip -d .agents/skills

Documentation by Trail of Bits

Diagramming Code

Generates Mermaid diagrams from Trailmark's code graph. A pre-made script handles Mermaid syntax generation; Claude selects the diagram type and parameters. Trailmark 0.4.0 includes a native trailmark diagram command; use it only after a version/command check, otherwise use this skill's bundled script.

When to Use

  • Visualizing call paths between functions

  • Drawing class inheritance hierarchies

  • Mapping module import dependencies

  • Showing class structure with members

  • Highlighting complexity hotspots with color coding

  • Tracing data flow from entrypoints to sensitive functions

When NOT to Use

  • Querying the graph without visualization (use the trailmark skill)

  • Mutation testing triage (use the genotoxic skill)

  • Architecture diagrams not derived from code (draw by hand)

Prerequisites

trailmark must be installed. If uv run trailmark fails, run:

uv tool install trailmark
# Python snippets: uv run --with trailmark python -   (a tool env is not importable)

DO NOT fall back to hand-writing Mermaid from source code reading. The script uses Trailmark's parsed graph for accuracy. If installation fails, report the error to the user.

Version Gate

Check whether native v0.4 diagram support exists:

trailmark diagram --help 2>/dev/null || uv run trailmark diagram --help 2>/dev/null

If this succeeds, you may use trailmark diagram. If it fails, use uv run {baseDir}/scripts/diagram.py, which keeps the older skill workflow intact. Do not assume the native CLI exists on Trailmark 0.2.x.


Quick Start

uv run {baseDir}/scripts/diagram.py \
    --target {targetDir} --language auto --type call-graph \
    --focus <function> --depth 2

# Trailmark 0.4.0+ equivalent after the Version Gate succeeds
uv run trailmark diagram \
    --target {targetDir} --language auto --type call-graph \
    --focus <function> --depth 2

Output is raw Mermaid text. Wrap in a fenced code block:

```mermaid
flowchart TB
    ...
```

Diagram Types

├─ "Who calls what?"               → --type call-graph
├─ "Class inheritance?"             → --type class-hierarchy
├─ "Module dependencies?"           → --type module-deps
├─ "Class members and structure?"   → --type containment
├─ "Where is complexity highest?"   → --type complexity
└─ "Path from input to function?"   → --type data-flow

For detailed examples of each type, see references/diagram-types.md.


Workflow

Diagram Progress:
- [ ] Step 1: Verify trailmark is installed
- [ ] Step 2: Identify diagram type from user request
- [ ] Step 3: Determine focus node and parameters
- [ ] Step 4: Run diagram.py script (or native trailmark diagram on v0.4+)
- [ ] Step 5: Verify output is non-empty and well-formed
- [ ] Step 6: Embed diagram in response

Step 1: Run uv run trailmark analyze --language auto --summary {targetDir}. Install if it fails. Do not run engine.preanalysis() for a diagram: the diagram command builds its own graph and does not use pre-analysis data, so every diagram type is identical with or without it. data-flow uses the entrypoints Trailmark records while parsing.

If auto-detection is wrong for the target, rerun with an explicit language or comma-separated list such as python,rust.

Step 2: Match the user's request to a --type using the decision tree above.

Step 3: For call-graph and data-flow, identify the focus function. Default --depth 2. Use --direction LR for dependency flows.

Step 4: Run the script and capture stdout. If the native v0.4 CLI is available, either command is acceptable; prefer the bundled script when you need behavior consistent with this skill's references.

Step 5: Check: output starts with flowchart or classDiagram, contains at least one node. If empty or malformed, consult references/mermaid-syntax.md.

Step 6: Wrap output in ```mermaid ``` code fence.


Script Reference

uv run {baseDir}/scripts/diagram.py [OPTIONS]
# or, on Trailmark 0.4.0+:
uv run trailmark diagram [OPTIONS]
ArgumentShortDefaultDescription
--target-trequiredDirectory to analyze
--language-lpythonSource language
--type-TrequiredDiagram type (see above)
--focus-fnoneCenter diagram on this node
--depth-d2BFS traversal depth
--directionTBLayout: TB (top-bottom) or LR (left-right)
--threshold10Min complexity for complexity type
Examples
# Call graph centered on a function
uv run {baseDir}/scripts/diagram.py -t src/ -l auto -T call-graph -f parse_file

# Class hierarchy for a Rust project
uv run {baseDir}/scripts/diagram.py -t src/ -l rust -T class-hierarchy

# Module dependency map, left-to-right
uv run {baseDir}/scripts/diagram.py -t src/ -l auto -T module-deps --direction LR

# Class members
uv run {baseDir}/scripts/diagram.py -t src/ -l auto -T containment

# Complexity heatmap (threshold 5)
uv run {baseDir}/scripts/diagram.py -t src/ -l auto -T complexity --threshold 5

# Data flow from entrypoints to a specific function
uv run {baseDir}/scripts/diagram.py -t src/ -l auto -T data-flow -f execute_query

Customization

Direction: Use TB (default) for hierarchical views, LR for left-to-right flows like dependency chains.

Depth: Increase --depth to see more of the call graph. Decrease to reduce clutter. The script warns if the diagram exceeds 100 nodes.

Focus: Always use --focus for call-graph on non-trivial codebases. For data-flow, omitting focus auto-targets the top 10 complexity hotspots.

Language: Prefer --language auto for polyglot or unfamiliar repos. Use an explicit language only when you know the target is single-language or you need to exclude unrelated components.


Supporting Documentation

Files

Requirements and compatibility

Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta

“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.

Needs: Needs Python, Needs Node.js

Security

What our scanner noticed· Low risk

  • Scripts that your agent may run

This skill includes scripts that your agent may run. Read them before you use it.

A static scan is not a guarantee. Skills are third-party content: review a skill before you let an agent use it.

Attribution and licence

Published by
Trail of Bits
Publisher
Trail of Bits (Official)
Source
trailofbits/skills · plugins/trailmark/skills/diagramming-code · commit e4dd0bb
Licence
Creative Commons Attribution-ShareAlike 4.0 International (redistribution allowed)
  • LICENSE (added by AutoGineer from LICENSE)
  • ATTRIBUTION.md (written by AutoGineer)
Synced

AutoGineer is not affiliated with or endorsed by Trail of Bits.

Download ZIP

The ZIP holds the skill’s files, its licence files and an ATTRIBUTION.md. Download diagramming-code.zip