Trusted skills for AI agents from official vendors and established maintainers. Every skill is attributed to its author, scanned, and comes with install steps for your AI tool.
184 skills
K-Dense· Community
Builds and audits reproducible physiological time-series research workflows using the NeuroKit2 library.
K-Dense· Community
A toolkit for processing and visualizing high-throughput sequencing data including ChIP-seq, RNA-seq, and ATAC-seq.
K-Dense· Community
A comprehensive workflow for processing bulk RNA-seq data from raw FASTQ files to gene-level counts ready for differential expression analysis.
K-Dense· Community
Compute multivariate RELSA severity scores and generate exploratory ARIMA forecasts for laboratory animal welfare studies.
K-Dense· Community
Estimate intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing data using validated atom maps and constrained optimization.
K-Dense· Community
A Python toolkit for biological sequence analysis, phylogenetics, and microbial ecology data.
K-Dense· Community
A toolkit for local computational pathology research, supporting slide processing, multiplex quantification, and spatial graph construction.
K-Dense· Community
Infers candidate gene regulatory networks from expression data using GRNBoost2 and GENIE3 algorithms.
K-Dense· Community
A comprehensive workflow for performing and interpreting pathway and gene-set enrichment analysis on genomic data.
K-Dense· Community
Extract and preprocess whole-slide histology image tiles for research workflows using Histolab.
K-Dense· Community
Builds, evaluates, and audits survival analysis workflows for right-censored and competing-risk data using scikit-survival.
K-Dense· Community
Analyze Cancer Dependency Map (DepMap) data to identify gene dependencies, co-essentiality, and biomarker associations in cancer models.
K-Dense· Community
Automates the preparation and execution of nf-core/pacsomatic matched tumor-normal PacBio HiFi genomics workflows.
K-Dense· Community
Organizes, queries, validates, and converts Brain Imaging Data Structure (BIDS) datasets. Supports organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing metadata sidecars, or creating BIDS derivatives.
K-Dense· Community
Integrates with the official LabArchives ELN REST-like API and Inventory API v1. Supports regional endpoint selection, signed-request construction, user authorization and UID flows, local LA container validation, and verified LabArchives integration workflows.
K-Dense· Community
Integrate with the Adaptyv Bio Foundry API and SDK to automate protein characterization experiments.
K-Dense· Community
A structured, local-only workflow for drafting clinical and research reports using verified source-fact manifests.
K-Dense· Community
Python interface for accessing and integrating bioinformatics databases including UniProt, KEGG, ChEMBL, and Reactome.
K-Dense· Community
A toolkit for reconciling genomic coordinate systems, normalizing variants, and validating assembly compatibility across bioinformatics formats.
K-Dense· Community
Featurize small molecules for machine learning using the Molfeat library.
K-Dense· Community
Access DeepMind's AlphaGenome Atlas for variant impact prediction, mechanistic interpretation, and regulatory effect analysis of SNVs.
K-Dense· Community
Access transformer-based DNA language models for regulatory genomics and gene expression prediction via REST API or MCP.
K-Dense· Community
Access molecular design and structural biology tools on the Tamarind Bio platform via REST API or MCP.
K-Dense· Community
Stores and retrieves genomic variant calls with TileDB-VCF. Use for indexed single-sample VCF/BCF ingestion, incremental cohorts, region and sample queries, streaming results, allele statistics, QC, and VCF/BCF export locally or through TileDB Cloud.