Trusted skills for AI agents from official vendors and established maintainers. Every skill is attributed to its author, scanned, and comes with install steps for your AI tool.
184 skills
K-Dense· Community
A toolkit for fitting probabilistic generative models to single-cell omics data, including RNA, ATAC, and multimodal integration.
K-Dense· Community
Query individual-level genotype data and variants from the 1000 Genomes Project cohort.
K-Dense· Community
A toolkit for managing local genomic interval workflows, including BED validation, consensus universe construction, and model planning.
K-Dense· Community
Develop, register, and operate bioinformatics workflows on the Latch platform using the Python SDK and CLI.
K-Dense· Community
Perform protein-small-molecule docking and pose generation using the DiffDock and DiffDock-L models.
K-Dense· Community
End-to-end analysis pipeline for Neuropixels extracellular electrophysiology recordings using SpikeInterface.
K-Dense· Community
Simulates biochemical kinetic models and generates reproducible COMBINE archives for reaction-network analysis.
K-Dense· Community
A structured framework for querying authoritative scientific and regulatory databases with reproducible provenance.
K-Dense· Community
Converts neuroscience imaging and behavioral data into validated Neurodata Without Borders (NWB) files.
K-Dense· Community
A lightweight Python library for reading, inspecting, and writing Flow Cytometry Standard (FCS) files.
K-Dense· Community
Guides protocol selection, input preparation, and ordering for Ginkgo Bioworks Cloud Lab services.
K-Dense· Community
Automates microscopy data workflows and metadata management for OMERO.server environments.
K-Dense· Community
Queries a pinned Precision Medicine Knowledge Graph (PrimeKG) CSV for typed gene, drug, disease, and phenotype nodes, direct associations, disease context, and one- or two-hop paths. Use for PrimeKG reproducibility, biological association lookup, and hypothesis generation with relation and data provenance preserved.
K-Dense· Community
Integrates the Folklore Clinical Variant Interpretation MCP to retrieve public variant evidence, literature, and ClinGen gene-disease assertions.
K-Dense· Community
A unified interface for querying over 20 bioinformatics databases and analysis tools via CLI or Python.
K-Dense· Community
A workflow for molecular property prediction and MoleculeNet benchmarks using DeepChem 2.8.0.
K-Dense· Community
A comprehensive toolkit for computational mass spectrometry, supporting proteomics and metabolomics data processing and analysis.
K-Dense· Community
A comprehensive toolkit for end-to-end single-cell RNA-seq analysis using Scanpy.
K-Dense· Community
Perform RNA velocity analysis on single-cell RNA sequencing data to infer directional trajectory hypotheses.
K-Dense· Community
Generates transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Used for predicted log1p-CPM expression from 224x224 tiles at about 20x, querying the released protein-coding gene panel by symbol, and whole-slide prediction after resolution-aware tiling with histolab.
K-Dense· Community
Python interface for HTSlib to read, query, and write genomic file formats like SAM, BAM, CRAM, and VCF.
K-Dense· Community
Integrates the Biohub esm Python SDK for protein generation, ESMC embeddings, and ESMFold2 structure prediction.
K-Dense· Community
Perform constraint-based metabolic modeling and systems biology analysis using COBRApy.
K-Dense· Community
A Python library for molecular filtering and compound triage in drug discovery.