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Agent Skills

Trusted skills for AI agents from official vendors and established maintainers. Every skill is attributed to its author, scanned, and comes with install steps for your AI tool.

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5813 skills

  • Liteparse

    K-Dense· Community

    Local document and PDF parsing with spatial text extraction and bounding box support.

    Data and AIClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository56.4k

  • Omero Integration

    K-Dense· Community

    Automates microscopy data workflows and metadata management for OMERO.server environments.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Exa Search

    K-Dense· Community

    A toolkit for performing web searches and batch URL content extraction using the Exa API, with specialized support for scholarly research.

    Data and AIClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Simpy

    K-Dense· Community

    Build, test, and analyze process-based discrete-event simulations using the SimPy library.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Primekg

    K-Dense· Community

    Queries a pinned Precision Medicine Knowledge Graph (PrimeKG) CSV for typed gene, drug, disease, and phenotype nodes, direct associations, disease context, and one- or two-hop paths. Use for PrimeKG reproducibility, biological association lookup, and hypothesis generation with relation and data provenance preserved.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyLow riskHas scriptsGitHub stars of the source repository56.4k

  • Cellxgene Census

    K-Dense· Community

    Queries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local single-cell data use scanpy, anndata, or scvi-tools.

    Data and AIClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskGitHub stars of the source repository56.4k

  • Statistical Power

    K-Dense· Community

    A comprehensive tool for calculating statistical power and required sample sizes for research study planning.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Folklore Variant Evidence

    K-Dense· Community

    Integrates the Folklore Clinical Variant Interpretation MCP to retrieve public variant evidence, literature, and ClinGen gene-disease assertions.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITGitHub stars of the source repository56.4k

  • Qiskit

    K-Dense· Community

    Build, simulate, and execute quantum circuits using Qiskit 2.x and IBM Quantum Runtime.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskHas scriptsGitHub stars of the source repository56.4k

  • Hypothesis Generation

    K-Dense· Community

    A structured framework for formulating testable scientific hypotheses and research plans from observations.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Gget

    K-Dense· Community

    A unified interface for querying over 20 bioinformatics databases and analysis tools via CLI or Python.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Deepchem

    K-Dense· Community

    A workflow for molecular property prediction and MoleculeNet benchmarks using DeepChem 2.8.0.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Pyopenms

    K-Dense· Community

    A comprehensive toolkit for computational mass spectrometry, supporting proteomics and metabolomics data processing and analysis.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Scanpy

    K-Dense· Community

    A comprehensive toolkit for end-to-end single-cell RNA-seq analysis using Scanpy.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    BSD-3-ClauseLow riskHas scriptsGitHub stars of the source repository56.4k

  • Scvelo

    K-Dense· Community

    Perform RNA velocity analysis on single-cell RNA sequencing data to infer directional trajectory hypotheses.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    BSD-3-ClauseLow riskHas scriptsGitHub stars of the source repository56.4k

  • Deepspot M

    K-Dense· Community

    Generates transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Used for predicted log1p-CPM expression from 224x224 tiles at about 20x, querying the released protein-coding gene panel by symbol, and whole-slide prediction after resolution-aware tiling with histolab.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyLow riskGitHub stars of the source repository56.4k

  • Torchdrug

    K-Dense· Community

    Builds and troubleshoots TorchDrug 0.2.1 workflows for molecular graphs, protein representation learning, and property prediction.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskGitHub stars of the source repository56.4k

  • Cirq

    K-Dense· Community

    Google's open-source framework for designing, simulating, and executing quantum circuits on quantum hardware and simulators.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskGitHub stars of the source repository56.4k

  • Pysam

    K-Dense· Community

    Python interface for HTSlib to read, query, and write genomic file formats like SAM, BAM, CRAM, and VCF.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • PPTX Posters

    K-Dense· Community

    A secure, manifest-driven workflow for creating and auditing editable scientific posters in PowerPoint.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Autoskill

    K-Dense· Community

    Analyze your Screenpipe history to automatically detect, draft, and propose new agent skills based on your repeated research workflows.

    Agent toolingClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Esm

    K-Dense· Community

    Integrates the Biohub esm Python SDK for protein generation, ESMC embeddings, and ESMFold2 structure prediction.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k

  • Markdown Mermaid Writing

    K-Dense· Community

    Generates scientific Markdown documentation and Mermaid structural diagrams for workflows, schemas, and relationships.

    Documents and contentClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskGitHub stars of the source repository56.4k

  • Matlab

    K-Dense· Community

    A toolkit for designing, reviewing, and planning MATLAB and GNU Octave numerical workflows.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k