MindBase — Karpathy's LLM Wiki, as a product
LLM wiki kit
First committed by frankchu91
Published in frankchu91/mindbase-llm-wiki. Publisher page
137 GitHub stars
What it is
Karpathy's LLM Wiki idea as a product — an AI that builds and maintains a markdown wiki from your notes and sources. MCP server + web UI, runs on free local models (Ollama), no API key needed. MIT.
Summary from the brain’s metadata
Karpathy's LLM Wiki idea as a product — an AI that builds and maintains a markdown wiki from your notes and sources. MCP server + web UI, runs on free local models (Ollama), no API key needed. MIT. One command: starts the local server, opens the web app, and walks you through picking a free local model that fits your RAM. No API key, nothing leaves your machine. (Node 20+)
How it works
Memory model: LLM wiki
AutoGineer overview, from the brain’s own files
Memory model: LLM wiki. Folders: .github (agent config, 2 files); docs (docs, 21 files); packages (source code, 185 files). The agent writes apps/browser-ext, apps/mcp.
| Folder | Role | Files |
|---|---|---|
| .github | agent-config | 2 |
| docs | docs | 21 |
| packages | source-code | 185 |
| .claude-plugin | folder | 1 |
| apps | folder | 512 |
| schema | folder | 5 |
| website | folder | 7 |
The agent writes
- apps/browser-ext evidence: CLAUDE.md
- apps/mcp evidence: CLAUDE.md
Requirements
Runtimes: Node.js
Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Google Antigravity, Kiro, OpenCode, Amp, Roo Code, Cline, JetBrains Junie, Devin (ex-Windsurf)
Set it up
This brain runs code automatically: 1 hook (claude-code). Review apps/plugin/hooks/hooks.json before opening the folder in Claude Code. No step below turns a hook on for you.
apps/plugin/hooks/hooks.json:${CLAUDE_PLUGIN_ROOT}/hooks/session-start
Clone the repository at the commit AutoGineer scanned:
git clone https://github.com/frankchu91/mindbase-llm-wiki.git && cd mindbase-llm-wiki && git checkout c5273d2336c4d686df41c2a1495f14f085707f51Claude Code reads CLAUDE.md from this folder automatically.
cd mindbase-llm-wiki && claude
AutoGineer scanned these files at commit c5273d2.
- Not scanned by AutoGineerThe author’s README also describes installing it as a Claude Code plugin marketplace. Read its install section: AutoGineer did not scan that path. https://github.com/frankchu91/mindbase-llm-wiki/blob/c5273d2336c4d686df41c2a1495f14f085707f51/README.md#install
- Not scanned by AutoGineerIts dependencies are installed by npm when you run it and were not scanned by AutoGineer (7 declared). https://www.npmjs.com/package/mindbase-mcp
First committed by frankchu91. Published in frankchu91/mindbase-llm-wiki. Licence: MIT License.
Usage
AutoGineer’s guidance for this type of brain
Put your raw sources in the kit’s folder and ask your agent to maintain the wiki from them: the agent writes the markdown pages and you read them.
Documentation by frankchu91
MindBase — Karpathy's LLM Wiki, as a product
Image: npm Image: npm downloads Image: CI Image: License: MIT Image: Website Image: Glama score
An open-source implementation of Andrej Karpathy's LLM Wiki idea: an AI that builds and maintains a wiki from your sources. Not RAG-in-a-vector-DB. A real markdown wiki on your disk, that an LLM gardens for you between conversations.
npx mindbase-appOne command: starts the local server, opens the web app, and walks you through picking a free local model that fits your RAM. No API key, nothing leaves your machine. (Node 20+)
<p align="center"> <img alt="Demo: /contribute in the MindBase web UI — the AI shows takeaways and a checkbox plan, and writes to the LLM wiki only after approval" src="docs/assets/contribute.gif" width="880"> </p>
MindBase implements Andrej Karpathy's LLM-Wiki pattern: you feed it sources (papers, articles, thoughts); the LLM reads, cross-references, flags contradictions, and writes structured wiki pages. Later, when you ask a question, the wiki already has the synthesized answer — no vector-search re-derivation at query time.
Status: Early access, actively developed. What's new: CHANGELOG · Releases
Why MindBase
You read a lot. Papers, articles, tweets, docs. You want to remember them, connect them, form opinions from them. Today you have two bad options:
Notion / Obsidian / Roam: Passive containers. You do all the organizing. AI features are bolted-on generation, not maintenance.
NotebookLM / Perplexity Pages / ChatGPT search: RAG-based. Nothing accumulates. Every question re-derives the answer from raw sources.
MindBase is the third option: the LLM actively maintains a persistent, structured wiki as you feed it sources. Knowledge compounds. Your context.md gets sharper every time you contribute. The AI remembers you across sessions because your beliefs are written down in markdown files — not stored in a chat history that gets summarized away.
Think of it as a personal Wikipedia that an AI intern writes for you, kept up to date, cross-referenced, and honest about what it doesn't know.
How it works (30 seconds)
Three physical layers on disk (Karpathy's model):
<p align="center"> <picture> <source media="(prefers-color-scheme: dark)" srcset="docs/assets/hero-dark.svg"> <img alt="MindBase: you feed sources, the LLM gardens them into a wiki that compounds — plain markdown on your disk" src="docs/assets/hero-light.svg" width="920"> </picture> </p>
| Layer | Who owns it | What lives there |
|---|---|---|
sources/ | You — append-only, the AI never rewrites it | Quick captures, full notes, PDFs, URLs |
context.md + sources/research/ | The AI — every change human-approved | The maintained wiki: synthesis, concept pages, [[wikilinks]] |
state/ · logs/ · artifacts/ | Derived — always rebuildable | Search index, snapshots, lint findings, op history |
Three operations run the loop: ingest (AI reads a source, discusses takeaways, you approve the wiki updates), build (regenerate context.md from everything unbuilt), lint (the AI audits its own wiki for contradictions, stale claims, and orphans).
What makes it different
The AI asks before writing. Every ingest shows takeaways + a checkbox plan; only what you approve gets written. No black-box edits to your knowledge.
You can watch the wiki absorb your notes. Every note carries a status chip — ✨ Add to wiki until digested, ✓ In wiki after.
It audits its own knowledge. One command re-reads the whole wiki and reports contradictions with the exact conflicting sentences quoted. Notion and NotebookLM structurally cannot do this.
Free and local by default. Hardware-detect wizard installs the best Ollama model for your RAM. Cloud keys optional.
Plain markdown on disk. Grep it, git it, open it in Obsidian, leave anytime.
Install
Browser (fastest): npx mindbase-app — shown above. Everything runs locally at localhost:4321.
Claude Code (flagship): the full Karpathy 8-step ingest with sub-agents, slash commands, and per-agent tool boundaries:
/plugin marketplace add frankchu91/mindbase-llm-wiki
/plugin install mb@mindbaseRestart when prompted, then type / — you should see /mb:contribute, /mb:build, /mb:ask, /mb:lint and 8 more. You get 5 sub-agents with strict tool allowlists (the builder has no file-write tool at all — only an atomic-write MCP call), plus a SessionStart hook that auto-injects your project context.
<p align="center"> <img alt="The core flow in Claude Code: /mb:contribute with an arXiv link — download, archive, discuss takeaways, approve, commit" src="docs/assets/terminal-contribute.png" width="880"> </p>
<details> <summary><b>Cursor</b></summary>
Add to ~/.cursor/mcp.json:
{ "mcpServers": { "mindbase": { "command": "npx", "args": ["-y", "mindbase-mcp"] } } }Restart Cursor — the tool picker should list mindbase_contribute and 48 others. Recommended: add a conventions block to ~/.cursor/rules.md so the LLM reliably routes "add to mindbase X" to the tools — copy it from the guide.
</details>
<details> <summary><b>Windsurf</b></summary>
Cascade settings → MCP → add:
{ "mcpServers": { "mindbase": { "command": "npx", "args": ["-y", "mindbase-mcp"] } } }Same rules-file approach as Cursor works for Cascade.
</details>
<details> <summary><b>Cline (VSCode)</b></summary>
Cline settings → MCP Servers:
{ "mcpServers": { "mindbase": { "command": "npx", "args": ["-y", "mindbase-mcp"] } } }Cline auto-detects; every tool call gets a confirmation dialog by default.
</details>
<details> <summary><b>Continue.dev</b></summary>
~/.continue/config.json, under experimental.modelContextProtocolServers:
{ "experimental": { "modelContextProtocolServers": [ { "transport": { "type": "stdio", "command": "npx", "args": ["-y", "mindbase-mcp"] } } ] } }MCP tools appear under @ in chat.
</details>
<details> <summary><b>Any other MCP client</b> (Zed, Aider, Goose, Claude Agent SDK…)</summary>
Point it at npx -y mindbase-mcp as a stdio server. See your client's MCP docs for the config location.
</details>
Next: create your first project and learn the four daily workflows in the Guide →
The web UI
Since 0.3 the browser app stands on its own — write notes in a full WYSIWYG editor (Cmd+N), quick-capture from anywhere (Cmd+I), and run the AI operations with approval cards: /contribute, /build, /lint, /research. Live demos on the website.
<p align="center"> <img alt="MindBase web UI — category tree on the left, the LLM-maintained context.md in the center, chat starters on the right" src="docs/assets/webui.png" width="920"> </p>
Free local models: the setup wizard detects your hardware and installs what fits — llama3.2:3b (8GB), qwen3:14b (24GB+), or Meta's Muse Glimmer 30B (32GB+ Apple Silicon, Ollama ≥ 0.32.7). Measured guidance: qwen3:14b for interactive work (~30s), Glimmer for background lint/build — slower, but its findings quote the exact conflicting sentences. The model switcher on the chat composer flips between them in two clicks.
<details> <summary><b>Feature matrix by editor</b></summary>
| Feature | Claude Code | Cursor / Windsurf / Cline / Continue | Web UI |
|---|---|---|---|
Slash commands (/mb:*) | ✅ | ❌ (use natural language) | ✅ (/contribute, /build, /lint, /research) |
| MCP tools directly | ✅ | ✅ | ❌ |
| Karpathy 8-step ingest with approval | ✅ (sub-agents) | ⚠️ Manual via prompt | ✅ (approval cards) |
| Contribute / ingest PDF & URL | ✅ | ✅ | ✅ (upload + ✨ Process) |
| Ask wiki with cited answers | ✅ | ✅ | ✅ |
| Build / health check | ✅ | ✅ | ✅ |
| Wiki tree browsing + rich editor | ❌ | ❌ | ✅ |
-p project-id routing | ✅ | ⚠️ natural language | ✅ (switcher) |
</details>
Where your data lives
Everything is plain markdown under ~/mindbase-data/ (override: MINDBASE_DATA_DIR):
~/mindbase-data/projects/my-research/
├── README.md # Ops manual — you edit, LLM reads
├── context.md # Synthesized truth — LLM writes, you approve
├── index.yaml # Auto-generated catalog
├── sources/
│ ├── contributors/<you>/ # Your dated entries + notes (append-only)
│ ├── research/ # LLM-authored wiki pages
│ └── raw/ # PDFs, HTML captures
├── logs/ # Chronological operation log
├── artifacts/ # Briefs, exports, lint findings
└── state/builder/snapshots/ # context.md snapshots for rollbackNo proprietary database — what you see on disk is what MindBase knows. git init it, back it up with anything, delete a project with rm -rf.
Architecture at a glance
Claude Code / Cursor / any MCP editor Web UI (npx mindbase-app)
│ MCP · sub-agents with │ /commands ·
│ per-agent tool allowlists │ approval cards
└─────────────┬─────────────────────────┬──────┘
▼ ▼
┌──────────────────────────────────────────────┐
│ One ops engine: gather context → single │
│ constrained JSON completion → human │
│ approval → whitelisted executors → log │
└─────────────────────┬────────────────────────┘
▼
~/mindbase-data/ · plain markdown
(LLM: Ollama local models or any cloud key)Monorepo: packages/core (TS strict library) · apps/mcp (49-tool MCP server) · apps/server + apps/web (Express + React UI) · apps/app (npx launcher) · apps/plugin (Claude Code bundle).
Docs & help
Guide — first project, the four daily workflows, multi-project routing, troubleshooting
Website — live demos
CHANGELOG · Issues — I reply to every issue same-day during beta
The idea: Karpathy's LLM Wiki gist
Roadmap
Next: browser extension for one-click page capture · audio input via Whisper · unified meta-tool for Cursor/Windsurf slash-like UX. Later: team projects with human-in-the-loop review · audio digests · desktop app · mobile capture.
Feedback
Beta through 2026-Q4. If you tried MindBase and gave up — please tell me why: issues or [e-mail address on the upstream page](mailto:e-mail address on the upstream page). The blockers you hit are gold.
License
MIT — do what you want, no warranty. If you build something interesting on top, I'd love to hear about it.
Built with the belief that AI's most valuable gift is not "generation on demand" but "gardening of a persistent artifact you own."
docs/guide.md
MindBase Guide — daily workflows, projects, troubleshooting
Install and quickstart live in the README. This guide covers what you'll do every day once you're set up.
First project (2 minutes)
Once your editor has the MCP server connected, create your first project.
Claude Code
/mb:init my-research --mission "Study transformer attention mechanisms"Claude will scaffold ~/mindbase-data/projects/my-research/ with README.md, context.md, index.yaml, and empty sources/, logs/, artifacts/ directories, and set it as your current project.
Cursor / Windsurf / Cline / Continue
Type in chat:
Create a new mindbase project called my-research about transformer
attention mechanisms.The LLM will call mindbase_init_project({ name: "my-research", mission: "..." }) and confirm.
Verify
/mb:status # in Claude CodeOr ask any other IDE:
what's the status of my mindbase?You should see:
MindBase — Project: my-research
Location: ~/mindbase-data/projects/my-research
README 28 lines
context.md 8 lines (last built: never)
index.yaml 5 lines
Contributors: 0 users, 0 entries
Sources: 0 research, 0 raw
Logs: 1 day
Artifacts: 0 outputsYou're ready.
Core workflows
The four things you'll do every day.
1. Contribute a thought
Add a short observation, a decision, or a hot take. Goes straight into today's contributor file, no ceremony.
Claude Code:
/mb:contribute "Attention is basically a soft dictionary lookup — each query
retrieves a weighted average of values based on similarity to keys."Any other IDE:
Add to my mindbase: Attention is basically a soft dictionary lookup — each
query retrieves a weighted average of values based on similarity to keys.Result: appends to ~/mindbase-data/projects/my-research/sources/contributors/<you>/2026-07-11.md and logs the operation.
2. Ingest a substantive source (paper, article, PDF)
For a real source, MindBase walks through Karpathy's 8-step ingest.
Claude Code (flagship — with sub-agent):
/mb:contribute /Downloads/attention-is-all-you-need.pdfThe contributor sub-agent will:
Read the PDF fully
Come back to you with 3 key takeaways
Propose which wiki pages to create/update
Wait for your approval
Execute — creating
sources/research/attention-mechanism.md, updatingcontext.md, appending logConfirm:
✓ Created 4, updated 3, logged.
Any other IDE (lite mode — no sub-agent):
Read this paper [/Downloads/paper.pdf] and ingest it into my mindbase.
Walk me through the 3 key takeaways before committing anything.You get most of the value but the sub-agent's structured approval flow is a Claude Code exclusive. The LLM in Cursor/Windsurf/Cline will typically call mindbase_contribute directly — you can steer the ritual manually via your prompt.
3. Ask your wiki
Query with cited answers.
Claude Code:
/mb:ask "how did I resolve the attention scaling factor question?"Any other IDE:
Search my mindbase — how did I resolve the attention scaling factor question?The LLM calls mindbase_ask_wiki (graph-aware retrieval: top hits + wikilink neighbors) then synthesizes a cited answer:
You resolved this on 2026-06-15 [context.md:42-51]. The 1/√d_k scaling
prevents dot products from growing too large in high dimensions, which
would push softmax into low-gradient regions [attention-mechanism.md:23-28].
Sources:
- [[context.md]]
- [[attention-mechanism.md]]
- [[sources/research/scaled-attention.md]]4. Build (regenerate context.md)
After a few contributions, regenerate the curated context.md so it reflects your current thinking.
Claude Code (flagship — with sub-agent):
/mb:buildThe builder sub-agent:
Validates project structure
Gathers all unbuilt sources since last build
Synthesizes them into a fresh
context.mdWrites atomically (snapshots the old one first so you can rollback)
Rebuilds the index
Any other IDE:
Rebuild my mindbase context.md — synthesize all unbuilt sources.The LLM will orchestrate the equivalent MCP tool calls. Slightly less structured than the sub-agent flow but functionally equivalent.
5. Health check (lint)
Ask MindBase to audit itself.
Claude Code:
/mb:lintAny other IDE:
Run a health check on my mindbase — find contradictions, orphans, gaps.Output looks like:
Found:
- 1 contradiction: attention-mechanism.md:15 says "scaling by √d" but
context.md:32 says "scaling by 1/√d". Same claim, different notation.
- 2 orphan pages: [[legacy-transformer-note]] and [[old-benchmark]]
have no inbound wikilinks.
- 1 gap: "positional encoding" is mentioned 4 times across the wiki
but has no dedicated page.
- 3 suggested cross-links: [[scaled-attention]] ↔ [[transformer-architecture]]
(co-mentioned in 3 sources).
Want to file follow-up notes for any of these?Working with multiple projects
You can have as many projects as you want (ai-research, insurance, dissertation). One is the "current" project — everything defaults to it. To switch, or to route a single operation to a specific project without switching, use flags.
Switch current project
Claude Code:
/mb:load ai-researchAny other IDE:
Switch my mindbase to the ai-research project.Writes {"currentProjectId": "ai-research"} to ~/mindbase-data/config.json. Persists across sessions.
One-off routing (-p flag) — Claude Code
Every command that takes a project supports -p <project-id> (or --project <project-id>):
/mb:contribute -p ai-agents "GPT-5 rumored 2026-Q4"
/mb:build -p insurance
/mb:ask -p ai-agents "my stance on agent marketplaces"
/mb:lint -p dissertation
/mb:daily-brief -p ai-agents --date 2026-07-05The -p flag does not change your current project. It only routes this one operation.
One-off routing — other IDEs
Just mention the project in natural language:
Add "GPT-5 rumored 2026-Q4" to my mindbase's ai-agents project.The LLM passes projectId: "ai-agents" to the MCP tool call. Current project unchanged.
Troubleshooting
"MCP server not connected"
Cause: malformed config JSON, or the server binary can't start.
Fix:
Run it manually:
npx -y mindbase-mcp < /dev/null— should print[mindbase-mcp] connected · dataDir=…on stderr and exit 0.If that works, the issue is in your editor's config (typo, wrong file, trailing comma).
Claude Code plugin users: verify the bundle exists —
ls /path/to/mindbase/apps/plugin/mcp-server/dist/cli.js— and rebuild withpnpm --filter @mindbase/plugin buildif missing.Restart your editor after fixing config.
"No current project"
Cause: You haven't run /mb:init yet, or config.json is missing currentProjectId.
Fix:
/mb:init my-first-projectOr manually: echo '{"currentProjectId": "my-project"}' > ~/mindbase-data/config.json
"V1_LAYOUT_UNSUPPORTED"
Cause: you have a legacy v1 project directory (from before the 2026-06 refactor).
Fix (Claude Code only):
/mb:migrate --project <legacy-project-name>Or delete it and start fresh: rm -rf ~/mindbase-data/projects/<legacy-project-name> then /mb:init.
Tools don't show in autocomplete
Cause: MCP handshake didn't complete.
Fix: Restart your editor. Check that no other MCP server is failing (a crash in one can block others in some clients).
The LLM in Cursor/Windsurf ignores my "add to mindbase" request
Cause: the LLM didn't recognize the intent as a tool call opportunity.
Fix: Add the .cursorrules block from the Cursor section. Being explicit ("call mindbase_contribute with text=...") works too.
"/api/counts 404" in Web UI
Cause: a pre-existing server-side route gap. Non-blocking — some tab count badges show 0 until fixed.
Fix: known issue, coming in the next patch release. Track it on the issues page.
More issues
Open a GitHub issue: github.com/frankchu91/mindbase-llm-wiki/issues
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- apps/web/src/lib/tree-filter.test.ts (not served here)
- apps/web/src/lib/tree-filter.ts (not served here)
- apps/web/src/lib/wikiPaths.ts (not served here)
- apps/web/src/main.tsx (not served here)
- apps/web/src/store/backlinks-cache.ts (not served here)
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- apps/web/tailwind.config.ts (not served here)
- apps/web/test/active-wiki.spec.ts (not served here)
- docs/guide.md
- docs/llm-wiki.md
- docs/manual-smoke-checklist.md
- docs/pivot-plan-2026-05-25.md
- docs/product-strategy-2026-05-25-addendum.md
- docs/product-strategy-2026-05-25.md
- docs/remote-access.md
- docs/testing-walkthrough.md
Advantages
- Local-first: the memory stays in files or a database on your own machine (a rule-derived fact from the brain’s files, evidence: README.md)
- Works with 14 MCP clients (a rule-derived fact from the brain’s files, evidence: README.md)
- Plain markdown memory that you can read and edit yourself (a rule-derived fact from the brain’s files, evidence: README.md)
- No API key is named in its files (a rule-derived fact from the brain’s files, evidence: README.md)
- Open licence (MIT) (a rule-derived fact from the brain’s files)
Limitations
- Runs code automatically: review what it runs before you open it (a rule-derived fact from the brain’s files)
- No ZIP download: install it from its source (a rule-derived fact from the brain’s files)
Security
Risk level: Medium risk
This brain runs
Agent instructions that run or fetch something (12)
CLAUDE.md:MindBase implements Andrej Karpathy's **LLM-Wiki pattern** (`docs/llm-wiki.md`), turned into a product for users who can't or won't run `claude-code + obsidian + a hand-written CLAUDE.md` themselves.CLAUDE.md:pnpm monorepo: `packages/core` (TS strict, vitest), `apps/server` (Express), `apps/web` (React 19 + Zustand), `apps/browser-ext`, `apps/mcp`, `apps/mobile`.CLAUDE.md:Server dev: `pnpm -F @mindbase/server dev` (tsx watch).CLAUDE.md:Web dev/build: `pnpm --filter @mindbase/web {dev,build,typecheck}`.CLAUDE.md:After modifying `packages/core` types, `pnpm --filter @mindbase/core build` before re-typechecking dependents.CLAUDE.md:Install via `claude --plugin-dir apps/plugin` for local dev or `/plugin install mindbase@mindbase` when published.CLAUDE.md:`apps/skill/` was removed in 2026-06-09 — the legacy `install.sh` skill-based deploy is gone;CLAUDE.md:the plugin is the only install path.CLAUDE.md:Plugin builds: `pnpm -F @mindbase/plugin build` (bundles `apps/mcp` into `apps/plugin/mcp-server/dist`).apps/plugin/skills/mindbase/SKILL.md:If none → tell user to run `/mb:load` or `/mb:init`apps/plugin/skills/mindbase/SKILL.md:Always call `mindbase_contribute` (plan/approve/execute primitive).apps/plugin/skills/mindbase/SKILL.md:Read → discuss → propose plan → execute.
MCP servers (4)
README.md(mindbase):npx -y mindbase-mcpREADME.md(mindbase):npx -y mindbase-mcpREADME.md(mindbase):npx -y mindbase-mcpapps/plugin/.mcp.json(mb):npx -y mindbase-mcp
Hooks (1)
apps/plugin/hooks/hooks.json(SessionStart):${CLAUDE_PLUGIN_ROOT}/hooks/session-start
- Medium risk: runs-mcp-server-unpinned-runner (README.md:88)
- Medium risk: runs-mcp-server-unpinned-runner (README.md:101)
- Medium risk: runs-mcp-server-unpinned-runner (README.md:114)
- Medium risk: runs-mcp-server-unpinned-runner (apps/plugin/.mcp.json)
Attribution and licence
- First committed by
frankchu91
- Publisher
- Haobing(Frank) Chu (Community)
- Source
- frankchu91/mindbase-llm-wiki · commit c5273d2
- Licence
- MIT License (files served here)
- ATTRIBUTION.md (written by AutoGineer)
- Synced
- Contributors
- frankchu91
AutoGineer is not affiliated with or endorsed by frankchu91.
Install from source
497 of its files are not served here, so there is no ZIP. frankchu91/mindbase-llm-wiki at c5273d2