llm-wiki-kit
LLM wiki kit
First committed by Ivy-Chen1999
Published in Ivy-Chen1999/llm-wiki-kit. Publisher page
20 GitHub stars
What it is
Clone-and-go agent skills + a starter Obsidian vault for an AI-maintained personal wiki. Based on Karpathy's LLM Wiki pattern.
AutoGineer overview, from the brain’s own files
llm-wiki-kit implements the LLM Wiki pattern, which shifts from traditional RAG (searching raw documents) to an agent-driven process that summarizes and structures information into linked Obsidian notes. By processing sources once, the system creates a persistent, queryable knowledge base. The kit includes 20 agent skills for tasks like ingesting URLs, mining conversation history, synthesizing notes, and maintaining wiki health, alongside a pre-configured Obsidian vault template.
How it works
Memory model: LLM wiki
AutoGineer overview, from the brain’s own files
The system organizes data into three layers: raw sources, the wiki (markdown notes with YAML frontmatter), and agent skills. Users interact with an agent that loads these skills to perform actions. The vault uses a flat structure with specific folders for notes, raw staging, journals, and system files. Skills are linked to the agent's environment, allowing the agent to automatically process, link, and maintain the wiki based on natural language commands.
| Folder | Role | Files |
|---|---|---|
| skills | agent-instructions | 24 |
| personal-skills | folder | 4 |
| vault-template | folder | 12 |
The agent writes
- skills/llm-wiki/references/karpathy-pattern.md evidence: README.md
Requirements
Apps: Obsidian
Set it up
This brain runs code automatically: 1 script. Review install.sh before opening the folder in Claude Code. No step below turns a hook on for you.
install.sh:sh install.sh
- Download the brain as a ZIP and unzip it where you keep your notes or project: https://mp-staging.autogineer.com/agent-brains/ivy-chen1999/llm-wiki-kit/download
cd llm-wiki-kit && claude
AutoGineer scanned these files at commit f511a35.
- Not scanned by AutoGineerThe author’s README also describes installing it from a clone of its repository. Read its install section: AutoGineer did not scan that path. https://github.com/Ivy-Chen1999/llm-wiki-kit/blob/f511a3520e1902a53c2776c209e6fc62d3cfa8da/README.md#setup
First committed by Ivy-Chen1999. Published in Ivy-Chen1999/llm-wiki-kit. Licence: MIT License.
Usage
AutoGineer overview, from the brain’s own files
- Ingest articles, PDFs, or web pages into the wiki.
- Query the wiki to retrieve information with source links.
- Synthesize connections between existing notes.
- Audit the wiki for orphans, broken links, or stale content.
- Automate the capture of chat history from Claude or CLI sessions.
- Maintain a controlled tag taxonomy and visual graph structure.
- “Save this link to my wiki”
- The agent fetches the URL, processes the content, and creates a structured note in the wiki.
- “What do I know about X?”
- The agent searches the wiki notes and provides an answer with links to the source material.
- “Audit my wiki”
- The agent checks for orphans, broken links, and contradictions, reporting on the health of the knowledge base.
- “Color my graph by category”
- The agent updates the Obsidian graph visualization based on the categories defined in the note frontmatter.
Documentation by Ivy-Chen1999
llm-wiki-kit
A set of agent skills and a starter Obsidian vault for keeping a personal wiki that an LLM helps maintain. Based on Andrej Karpathy's LLM Wiki pattern.
The idea: instead of searching raw documents every time you have a question (RAG), the agent processes a source once and writes it into structured, linked Obsidian notes. Questions are then answered from those notes. You pick the sources and ask the questions; the agent does the summarizing, linking, and filing.
How it's organized
There are three layers:
Raw sources — your original material (articles, PDFs, notes, screenshots). Never modified.
The wiki — markdown notes with YAML frontmatter and
[[wikilinks]], kept in the vault.The skills — the instruction files in
skills/that tell the agent how to maintain the wiki.
What's in this repo
llm-wiki-kit/
├── skills/ 20 agent skills
├── vault-template/ an empty vault you can copy and start using
├── .env.example config (vault path, sources, search)
├── install.sh links the skills into your agent's skills directory
├── setup-qmd.sh optional: installs and indexes local search
└── LICENSESkills
| Skill | What it does |
|---|---|
llm-wiki | Explains the pattern and retrieval approach. Start here. |
wiki-setup | Initializes a new vault (structure, system files, config). |
wiki-ingest | Turns a raw source into wiki notes. |
ingest-url | Fetches a URL and ingests it. |
data-ingest | Ingests structured/tabular data. |
claude-history-ingest | Mines Claude conversation history into the wiki. |
codex-history-ingest | Mines Codex CLI session history into the wiki. |
wiki-query | Answers questions from the wiki, with links to source notes. |
wiki-research | Runs web research and files the results into the wiki. |
wiki-update | Revises existing notes as things change. |
wiki-synthesize | Builds notes that connect several existing notes. |
cross-linker | Finds and adds missing [[wikilinks]]. |
tag-taxonomy | Keeps tags to a controlled list. |
wiki-lint | Checks for orphans, broken links, contradictions, stale notes. |
wiki-status | Reports what's new and what's ready to ingest. |
wiki-dashboard | Generates a vault overview. |
wiki-rebuild | Rebuilds the index and cache from the notes. |
wiki-export | Exports the wiki to other formats. |
wiki-capture | Drops rough notes into the staging area. |
graph-colorize | Colors the Obsidian graph by category. |
Requirements
Obsidian, to read and edit the vault.
An agent that loads skills from a directory — Claudian (the Obsidian + Claude plugin), Claude Code, or similar.
Optional:
qmd, a local search engine (BM25 + vector). Without it, the skills useGrepinstead, so it's not required. Seesetup-qmd.shor runnpm install -g @tobilu/qmd.
Setup
Two commands. The installer is interactive and does everything else (links the skills, asks where the vault should live, creates it, writes the config):
git clone https://github.com/Ivy-Chen1999/llm-wiki-kit.git
cd llm-wiki-kit
./install.shThen follow the final instructions it prints: open the vault folder in Obsidian, and ask your agent to ingest a source or answer a question.
Notes:
The installer links skills into
~/.claude/skills, which Claude (Claude Code and the Claudian Obsidian plugin) reads automatically. For another agent:./install.sh --skills-dir <that agent's skills dir>.It offers to install local search (
qmd) at the end. Saying no is fine — the skills fall back toGrep. You can run./setup-qmd.shlater instead.Re-running is safe: existing skills, vault, and config are left untouched.
Working with more than one vault
The skills resolve the target vault in this order (highest first):
an
OBSIDIAN_VAULT_PATHenvironment variable (per-session override),a
.envat the current working directory / vault root (vault-scoped),~/.obsidian-wiki/config(the global default).
So to keep a vault self-contained, drop a .env at its root pointing OBSIDIAN_VAULT_PATH at itself (and give it its own QMD_WIKI_COLLECTION). Work from that vault and the skills target only it — the global default and your other vaults are untouched.
How to use it — just say what you want
You don't memorize skill names. Skills trigger automatically from what you say — Claude matches your message to the right one. Open your vault in Claude and talk normally:
| You want to… | Just say something like… |
|---|---|
| Add an article / file / folder | "add this to my wiki", "ingest these docs" |
| Add a web page | "save this link to my wiki", paste a URL + "add this" |
| Ask what you know | "what do I know about X?", "find everything on Y" |
| Quick answer (no deep read) | "quick answer: …", "just scan for …" |
| Save the current chat | "save this conversation to my wiki" |
| Connect related notes | "find missing links", "my wiki feels disconnected" |
| Find cross-cutting themes | "what concepts keep coming up together?" |
| Check health / fix issues | "audit my wiki", "what needs fixing?" |
| See what's been ingested | "what's the status of my wiki?" |
| Research a topic from the web | "research X and file it", "deep dive on Y" |
| Tidy up tags | "clean up my tags", "normalize tags" |
| Color the graph | "color my graph by category" |
| Start fresh | "archive and rebuild the wiki" |
If a phrasing doesn't trigger the right skill, just name it ("use wiki-ingest") — but normal language usually works.
Vault layout
The vault-template/ uses a flat layout: all notes live in notes/, and the category is set in frontmatter (category: concept|entity|reference|insight|synthesis).
my-wiki/
├── notes/ the notes
├── raw/ staging area for unprocessed sources
├── journal/ daily notes
├── Templates/ note and daily-note templates
└── _system/
├── index.md table of contents (maintained by the skills)
├── hot.md short summary of recent activity
├── log.md append-only change log
└── tags.md tag listIf you prefer one folder per category, wiki-setup can generate that layout instead.
Make it your own
The 20 skills above are the shared core. The skills that pay off most are usually personal — shaped around how you work. You're encouraged to add your own:
a retro skill that writes a project post-mortem into the vault,
a digest skill that pulls your todos + field news into a dated entry,
your own ingest house-style, or a dispatcher that routes "/wiki do X".
personal-skills/ has a blank template and two worked examples (retro, digest) to copy and adapt. Personal skills live in ~/.claude/skills/, not in this repo — so updating the shared core (git pull) never touches them.
Credits
The pattern comes from Andrej Karpathy's LLM Wiki (the three-layer structure and the idea of processing a source once instead of re-searching it each time). His original write-up is included in
skills/llm-wiki/references/karpathy-pattern.md.Built for Obsidian.
The skills were taken from a personal vault and generalized: hardcoded paths, personal collection names, and non-English text removed.
License
MIT — see LICENSE.
skills/claude-history-ingest/SKILL.md
name: claude-history-ingest description: > Ingest Claude Code conversation history into the Obsidian wiki. Use this skill when the user wants to mine their past Claude conversations for knowledge, import their ~/.claude folder, extract insights from previous coding sessions, or says things like "process my Claude history", "add my conversations to the wiki", "what have I discussed with Claude before". Also triggers when the user mentions their .claude folder, Claude projects, session data, past conversation logs, local-agent-mode sessions, or audit logs.
Claude History Ingest — Conversation Mining
You are extracting knowledge from the user's past Claude Code conversations and distilling it into the Obsidian wiki. Conversations are rich but messy — your job is to find the signal and compile it.
This skill can be invoked directly or via the wiki-history-ingest router (/wiki-history-ingest claude).
Before You Start
Resolve the vault path (precedence, highest first): the
OBSIDIAN_VAULT_PATHenvironment variable if set, else a.envin the current working directory (vault-scoped), else~/.obsidian-wiki/config(global default). Also readCLAUDE_HISTORY_PATH(defaults to~/.claude).Read
.manifest.jsonat the vault root to check what's already been ingestedRead
index.mdat the vault root to know what the wiki already contains
Ingest Modes
Append Mode (default)
Check .manifest.json for each source file (conversation JSONL, memory file). Only process:
Files not in the manifest (new conversations, new memory files, new projects)
Files whose modification time is newer than their
ingested_atin the manifest
This is usually what you want — the user ran a few new sessions and wants to capture the delta.
Full Mode
Process everything regardless of manifest. Use after a wiki-rebuild or if the user explicitly asks.
Claude Code Data Layout
Claude Code stores data in two locations. Scan both.
Source 1: ~/.claude/ (CLI sessions)
~/.claude/
├── projects/ # Per-project directories
│ ├── -Users-name-project-a/ # Path-derived name (slashes → dashes)
│ │ ├── <session-uuid>.jsonl # Conversation data (JSONL)
│ │ └── memory/ # Structured memories
│ │ ├── MEMORY.md # Memory index
│ │ ├── user_*.md # User profile memories
│ │ ├── feedback_*.md # Workflow feedback memories
│ │ └── project_*.md # Project context memories
│ ├── -Users-name-project-b/
│ │ └── ...
├── sessions/ # Session metadata (JSON)
│ └── <pid>.json # {pid, sessionId, cwd, startedAt, kind, entrypoint}
├── history.jsonl # Global session history
├── tasks/ # Subagent task data
├── plans/ # Saved plans
└── settings.jsonSource 2: ~/Library/Application Support/Claude/local-agent-mode-sessions/ (Desktop app agent sessions)
The Claude desktop app stores local agent mode sessions here. The structure is deeply nested:
~/Library/Application Support/Claude/local-agent-mode-sessions/
└── <outer-uuid>/
└── <inner-uuid>/
├── local_<session-uuid>.json # Session metadata
└── local_<session-uuid>/
├── audit.jsonl # Audit log — tool calls, file reads, commands run
└── .claude/
└── projects/
└── <path-encoded-name>/ # Same path-encoding as ~/.claude/projects/
└── <uuid>.jsonl # Conversation transcript (same JSONL format as CLI)How to find all local-agent-mode sessions:
# Find all session metadata files
find ~/Library/Application\ Support/Claude/local-agent-mode-sessions -name "local_*.json" -maxdepth 4
# Find all audit logs
find ~/Library/Application\ Support/Claude/local-agent-mode-sessions -name "audit.jsonl"
# Find all conversation transcripts
find ~/Library/Application\ Support/Claude/local-agent-mode-sessions -name "*.jsonl" -path "*/.claude/projects/*"Session metadata (local_<uuid>.json) — JSON file with fields like sessionId, cwd, startedAt, model, title. Read this first to understand the session context before opening the transcript.
Audit log (audit.jsonl) — Each line is a JSON record of one agent action: tool calls (Read, Write, Bash, Edit), file accesses, shell commands executed, MCP calls. Useful for understanding what the agent actually did — often richer signal than the conversation text alone. Fields: type, toolName, input, output, timestamp, sessionId.
Conversation transcript (.claude/projects/.../<uuid>.jsonl) — Identical format to CLI conversation JSONL. Parse the same way as ~/.claude/projects/*/*.jsonl.
Key data sources ranked by value (both locations combined):
Memory files (
~/.claude/projects/*/memory/*.md) — Pre-distilled, already wiki-friendly. Gold.Conversation JSONL (both
~/.claude/projects/*/*.jsonland desktop app transcripts) — Full conversation transcripts. Rich but noisy.Audit logs (
audit.jsonlin desktop sessions) — Tool-call level record of what was done. Useful for extracting concrete actions, file patterns, and command patterns even when the conversation is sparse.Session metadata (
sessions/*.jsonandlocal_*.json) — Tells you which project, when, and what CWD.
Step 1: Survey and Compute Delta
Scan both data locations and compare against .manifest.json:
# --- Source 1: CLI sessions (~/.claude) ---
# Find all projects
Glob: ~/.claude/projects/*/
# Find memory files (highest value)
Glob: ~/.claude/projects/*/memory/*.md
# Find conversation JSONL files
Glob: ~/.claude/projects/*/*.jsonl
# --- Source 2: Desktop app local-agent-mode sessions ---
DESKTOP_SESSIONS="$HOME/Library/Application Support/Claude/local-agent-mode-sessions"
# Session metadata
find "$DESKTOP_SESSIONS" -name "local_*.json" -maxdepth 4
# Audit logs
find "$DESKTOP_SESSIONS" -name "audit.jsonl"
# Conversation transcripts
find "$DESKTOP_SESSIONS" -name "*.jsonl" -path "*/.claude/projects/*"Build a unified inventory and classify each file:
New — not in manifest → needs ingesting
Modified — in manifest but file is newer → needs re-ingesting
Unchanged — in manifest and not modified → skip in append mode
Report to the user: "Found X CLI projects, Y desktop sessions. Memory files: A. Conversations: B. Audit logs: C. Delta: D new, E modified."
Step 2: Ingest Memory Files First
Memory files are already structured with YAML frontmatter:
---
name: memory-name
description: one-line description
type: user|feedback|project|reference
---
Memory content here.For each memory file:
Read it and parse the frontmatter
usertype → feeds into an entity page about the user, or concept pages about their domainfeedbacktype → feeds into skills pages (workflow patterns, what works, what doesn't)projecttype → feeds into entity pages for the projectreferencetype → feeds into reference pages pointing to external resources
The MEMORY.md index file in each project is a quick summary — read it first to decide which individual memory files are worth reading in full.
Step 3: Parse Conversation JSONL
Each JSONL file is one conversation session. Each line is a JSON object:
{
"type": "user|assistant|progress|file-history-snapshot",
"message": {
"role": "user|assistant",
"content": "text string"
},
"uuid": "...",
"timestamp": "2026-03-15T10:30:00.000Z",
"sessionId": "...",
"cwd": "/path/to/project",
"version": "2.1.59"
}For assistant messages, content may be an array of content blocks:
{
"content": [
{"type": "thinking", "text": "..."},
{"type": "text", "text": "The actual response..."},
{"type": "tool_use", "name": "Read", "input": {...}}
]
}What to extract from conversations:
Filter to
type: "user"andtype: "assistant"entries onlyFor assistant entries, extract
textblocks (skipthinkingandtool_use— those are noise)The
cwdfield tells you which project this conversation belongs toThe project directory name (e.g.,
-Users-name-Documents-projects-my-app) tells you the project path
Skip these:
type: "progress"— internal agent progress updatestype: "file-history-snapshot"— file state trackingSubagent conversations (under
subagents/subdirectories) — unless the user specifically asks
Step 3b: Parse Audit Logs (desktop sessions only)
For each audit.jsonl found under local-agent-mode-sessions/, read it line by line. Each line is a JSON record of one agent action:
{
"type": "tool_call",
"toolName": "Bash",
"input": {"command": "npm test"},
"output": "...",
"timestamp": "2026-04-10T14:22:00Z",
"sessionId": "..."
}What to extract from audit logs:
File access patterns — which files does the agent repeatedly Read or Edit? These are the high-value files in the project. Note them as project references.
Shell commands — recurring Bash commands reveal the project's build/test/deploy workflow. Distill these into a
skills/page (e.g. "how this project is built and tested").Tool call sequences — if the agent always does Read → Edit → Bash in a particular order, that's a workflow pattern worth capturing.
Error patterns — failed tool calls (non-zero exit codes, error outputs) reveal pain points, known rough edges, or recurring bugs.
MCP tool calls — calls to MCP tools reveal which external services and APIs the project integrates with.
Skip from audit logs:
Routine file reads with no pattern (e.g. reading config files once)
Tool outputs that are just noise (long stack traces, verbose logs) — summarize the error class, not the full output
Anything that looks like secrets, tokens, or credentials in command arguments or outputs
Cross-reference with the conversation transcript: The audit log tells you what happened; the conversation tells you why. When both are available for the same session, use them together — the audit log grounds the conversation in concrete actions.
Read the paired local_<uuid>.json session metadata before processing the audit log — it gives you cwd, startedAt, and title to contextualize the actions.
Step 4: Cluster by Topic
Don't create one wiki page per conversation. Instead:
Group extracted knowledge by topic across conversations
A single conversation about "debugging auth + setting up CI" → two separate topics
Three conversations across different days about "React performance" → one merged topic
The project directory name gives you a natural first-level grouping
Step 5: Distill into Wiki Pages
Each Claude project maps to a project directory in the vault. The project directory name from ~/.claude/projects/ encodes the original path — decode it to get a clean project name:
-Users/Documents/projects/my-Project → myproject
-Users/Documents/projects/Another-app → anotherappProject-specific vs. global knowledge
| What you found | Where it goes | Example |
|---|---|---|
| Project architecture decisions | projects/<name>/concepts/ | projects/my-project/concepts/main-architecture.md |
| Project-specific debugging | projects/<name>/skills/ | projects/my-project/skills/api-rate-limiting.md |
| General concept the user learned | concepts/ (global) | concepts/react-server-components.md |
| Recurring problem across projects | skills/ (global) | skills/debugging-hydration-errors.md |
| A tool/service used | entities/ (global) | entities/vercel-functions.md |
| Patterns across many conversations | synthesis/ (global) | synthesis/common-debugging-patterns.md |
For each project with content, create or update the project overview page at projects/<name>/<name>.md — named after the project, not _project.md. Obsidian's graph view uses the filename as the node label, so _project.md makes every project show up as _project in the graph. Naming it <name>.md gives each project a distinct, readable node name.
Important: Distill the knowledge, not the conversation. Don't write "In a conversation on March 15, the user asked about X." Write the knowledge itself, with the conversation as a source attribution.
Write a summary: frontmatter field on every new/updated page — 1–2 sentences, ≤200 chars, answering "what is this page about?" for a reader who hasn't opened it. wiki-query's cheap retrieval path reads this field to avoid opening page bodies.
Mark provenance per the convention in llm-wiki (Provenance Markers section):
Memory files are mostly extracted — the user wrote them by hand and they're already distilled. Treat memory-derived claims as extracted unless you're stitching together claims from multiple memory files.
Conversation distillation is mostly inferred. You're synthesizing a coherent claim from many turns of dialogue, often filling in implicit reasoning. Apply
^[inferred]liberally to synthesized patterns, generalizations across sessions, and "what the user really meant" interpretations.Use
^[ambiguous]when the user changed their mind across sessions or when assistant and user contradicted each other and the resolution is unclear.Write a
provenance:frontmatter block on every new/updated page summarizing the rough mix.
Step 6: Update Manifest, Journal, and Special Files
Update .manifest.json
For each source file processed, add/update its entry with:
ingested_at,size_bytes,modified_atsource_type: one of"claude_conversation","claude_memory","claude_audit_log","claude_desktop_session"project: the decoded project namepages_createdandpages_updatedlists
Also update the projects section of the manifest:
{
"project-name": {
"source_path": "~/.claude/projects/-Users-...",
"vault_path": "projects/project-name",
"last_ingested": "TIMESTAMP",
"conversations_ingested": 5,
"conversations_total": 8,
"memory_files_ingested": 3,
"desktop_sessions_ingested": 2,
"audit_logs_ingested": 2
}
}Create journal entry + update special files
Update index.md and log.md per the standard process:
- [TIMESTAMP] CLAUDE_HISTORY_INGEST projects=N conversations=M desktop_sessions=D audit_logs=A pages_updated=X pages_created=Y mode=append|fullhot.md — Read $OBSIDIAN_VAULT_PATH/hot.md (create from the template in wiki-ingest if missing). Update Recent Activity with a one-line summary — e.g. "Ingested 5 Claude conversations across 2 projects; surfaced patterns in API design and testing strategy." Keep the last 3 operations. Update Active Threads if any ongoing project is now better understood. Update updated timestamp.
Privacy
Distill and synthesize — don't copy raw conversation text verbatim
Skip anything that looks like secrets, API keys, passwords, tokens
If you encounter personal/sensitive content, ask the user before including it
The user's conversations may reference other people — be thoughtful about what goes in the wiki
Reference
See references/claude-data-format.md for more details on the data structures.
48 files
- .env.example
- .gitignore
- ATTRIBUTION.md
- AUTOGINEER-RUNS.md
- LICENSE
- README.md
- install.sh
- personal-skills/README.md
- personal-skills/SKILL.template.md
- personal-skills/digest.example/SKILL.md
- personal-skills/retro.example/SKILL.md
- setup-qmd.sh
- skills/claude-history-ingest/SKILL.md
- skills/claude-history-ingest/references/claude-data-format.md
- skills/codex-history-ingest/SKILL.md
- skills/codex-history-ingest/references/codex-data-format.md
- skills/cross-linker/SKILL.md
- skills/data-ingest/SKILL.md
- skills/graph-colorize/SKILL.md
- skills/ingest-url/SKILL.md
- skills/llm-wiki/SKILL.md
- skills/llm-wiki/references/karpathy-pattern.md
- skills/tag-taxonomy/SKILL.md
- skills/wiki-capture/SKILL.md
- skills/wiki-dashboard/SKILL.md
- skills/wiki-export/SKILL.md
- skills/wiki-ingest/SKILL.md
- skills/wiki-ingest/references/ingest-prompts.md
- skills/wiki-lint/SKILL.md
- skills/wiki-query/SKILL.md
- skills/wiki-rebuild/SKILL.md
- skills/wiki-research/SKILL.md
- skills/wiki-setup/SKILL.md
- skills/wiki-status/SKILL.md
- skills/wiki-synthesize/SKILL.md
- skills/wiki-update/SKILL.md
- vault-template/.obsidian/app.json
- vault-template/.obsidian/appearance.json
- vault-template/Home.md
- vault-template/Templates/daily-note.md
- vault-template/Templates/note.md
- vault-template/_system/hot.md
- vault-template/_system/index.md
- vault-template/_system/log.md
- vault-template/_system/tags.md
- vault-template/journal/.gitkeep
- vault-template/notes/.gitkeep
- vault-template/raw/.gitkeep
Advantages
- Processes sources once into structured notes rather than performing repeated RAG searches. evidence: README.md
- Supports custom personal skills that persist outside the shared core repository. evidence: README.md
Limitations
- Requires an agent capable of loading skills from a directory, such as Claude Code or the Claudian plugin. evidence: README.md
- Local search functionality requires an optional external dependency (qmd) to avoid falling back to Grep. evidence: README.md
Security
Risk level: Medium risk
This brain runs
Install scripts (1)
install.sh:sh install.sh
Agent instructions that run or fetch something (48)
personal-skills/digest.example/SKILL.md:Run web searches for the user's chosen topics (edit this list to your field).personal-skills/retro.example/SKILL.md:`git log --oneline -20` (for the development arc)skills/claude-history-ingest/SKILL.md:├── audit.jsonl # Audit log — tool calls, file reads, commands runskills/cross-linker/SKILL.md:**Run after every ingest.** New pages are almost always poorly connected.skills/graph-colorize/SKILL.md:Tell the user to open it once, then re-run.skills/graph-colorize/SKILL.md:**New category value appears later**: a category not in the mapping gets no entry and its nodes stay default gray — re-run to pick it up.skills/graph-colorize/SKILL.md:Re-running is safe: each run creates a new backup, only `colorGroups` is rewritten.skills/ingest-url/SKILL.md:Read `.manifest.json` to check if this URL was already ingested· uses the networkskills/ingest-url/SKILL.md:**Git remote name** — run `git remote get-url origin 2>/dev/null` from the current working directory.skills/ingest-url/SKILL.md:**If available:** Use `defuddle <url>` (via Bash) to retrieve a clean, stripped-down markdown version of the page.· uses the networkskills/llm-wiki/SKILL.md:Put a `.env` at a vault's root (or run the skill from inside it) and that vault wins, regardless of the global default.skills/llm-wiki/SKILL.md:**`~/.obsidian-wiki/config`** — the global default, written by `install.sh`.skills/wiki-export/SKILL.md:Neo4j Cypher `MERGE` statements — paste into Neo4j Browser or run with `cypher-shell`:skills/wiki-export/SKILL.md:**Re-running is safe** — all output files are overwritten on each runskills/wiki-ingest/SKILL.md:If your model doesn't support vision, skip image sources and tell the user which files were skipped so they can re-run with a vision-capable model.skills/wiki-lint/SKILL.md:Also verify after every lint run: are `_system/index.md` and `_system/hot.md` up to date?skills/wiki-lint/SKILL.md:Run these checks in order.skills/wiki-lint/SKILL.md:Run the `cross-linker` skill targeted at the fragmented tag — it will surface and insert the missing linksskills/wiki-lint/SKILL.md:Run the `cross-linker` skill first if affinity scores look stale (e.g., `affinity: {}` on a page with many wikilinks)skills/wiki-lint/SKILL.md:For each pair, run a quick grep to count pages that link to both:skills/wiki-lint/SKILL.md:Run `/wiki-synthesize` to automatically discover and fill the top gapsskills/wiki-lint/SKILL.md:- **#systems** — 7 pages, cohesion=0.06 ⚠️ — run cross-linker on this tagskills/wiki-lint/SKILL.md:| [[Caching]] × [[Consistency]] | 5 pages | Run `/wiki-synthesize` |skills/wiki-lint/SKILL.md:| [[Testing]] × [[Observability]] | 3 pages | Run `/wiki-synthesize` |skills/wiki-rebuild/SKILL.md:They can now run:skills/wiki-research/SKILL.md:**Source Verification (mandatory before filing any note):** For every claim you intend to write into a wiki page, you must be able to point to a URL you successfully fetched with `WebFetch`.· uses the networkskills/wiki-research/SKILL.md:For each angle, run **2-3 `WebSearch` queries** using varied phrasingskills/wiki-research/SKILL.md:For the top 2-3 results per angle, use `WebFetch` (or `defuddle <url>` if available — cleaner extraction) to get content· uses the networkskills/wiki-research/SKILL.md:Run **up to 5 targeted searches** specifically addressing these gaps.skills/wiki-research/SKILL.md:Run one final targeted pass (2-3 searches) to find authoritative resolutionskills/wiki-setup/SKILL.md:Install instructions: see `.env.example` (QMD section).skills/wiki-setup/SKILL.md:Tell the user about these recommended community plugins (they install manually):skills/wiki-setup/SKILL.md:Run a quick sanity check:skills/wiki-setup/SKILL.md:Run `wiki-status` to see what's available to ingestskills/wiki-setup/SKILL.md:Run `wiki-ingest` to add their first sourcesskills/wiki-setup/SKILL.md:Run `claude-history-ingest` to mine their Claude conversationsskills/wiki-setup/SKILL.md:Run `codex-history-ingest` to mine their Codex sessions (if they use Codex)skills/wiki-setup/SKILL.md:Run `wiki-status` again anytime to check the deltaskills/wiki-status/SKILL.md:**Graph delta since last run.** Compare the current link graph to the snapshot stored in the previous `_insights.md`:skills/wiki-status/SKILL.md:Flag: pages that were isolated last run but now have incoming links ("newly connected: X, Y")skills/wiki-status/SKILL.md:Flag: pages that lost incoming links since last run ("link target may have been renamed: A, B")skills/wiki-status/SKILL.md:At the very end, embed a compact graph snapshot as an HTML comment so the next run can diff against it.skills/wiki-status/SKILL.md:- **#systems** — 7 pages, cohesion 0.06 ⚠️ run cross-linker on this tagskills/wiki-status/SKILL.md:## Graph Delta Since Last Runskills/wiki-synthesize/SKILL.md:Run this for your top candidate concepts and intersect the result sets.skills/wiki-synthesize/SKILL.md:This gives the user visibility into what the wiki thinks is worth exploring without forcing every synthesis in one run.skills/wiki-update/SKILL.md:If `~/.obsidian-wiki/config` doesn't exist, tell the user to run `bash setup.sh` from their obsidian-wiki repo first.skills/wiki-update/SKILL.md:Use `git log <last_commit>..HEAD --oneline` to see what's new.
- Medium risk: runs-instruction-instruction-network (skills/ingest-url/SKILL.md:28)
- Medium risk: runs-instruction-instruction-network (skills/ingest-url/SKILL.md:60)
- Medium risk: runs-instruction-instruction-network (skills/wiki-research/SKILL.md:22)
- Medium risk: runs-instruction-instruction-network (skills/wiki-research/SKILL.md:43)
- Low risk: scripts-present (install.sh)
Attribution and licence
- First committed by
Ivy-Chen1999
- Publisher
- Yuxin (Ivy) Chen (Community)
- Source
- Ivy-Chen1999/llm-wiki-kit · commit f511a35
- Licence
- MIT License (files served here)
- ATTRIBUTION.md (written by AutoGineer)
- Synced
- Contributors
- Ivy-Chen1999
AutoGineer is not affiliated with or endorsed by Ivy-Chen1999.
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