Train Sentence Transformers
Hugging FaceOfficialPublished by Hugging Face
- Skill
- Workflow
- Data and AI
- Apache-2.0
- Medium risk
- Has scripts
AutoGineer summary
Written by AutoGineer from the skill’s own files, not by the author
This skill provides a standardized approach to training various embedding and ranking models using the sentence-transformers framework. It acts as a routing system that directs users to specific production templates and technical references based on the chosen model architecture. The workflow covers the entire lifecycle from model selection and data preparation to loss function configuration, evaluation, and publishing to the Hugging Face Hub.
What it does
- Routes users to appropriate training templates for bi-encoders, cross-encoders, sparse encoders, and multi-vector encoders.
- Provides technical references for loss functions, evaluators, and model architectures.
- Offers guidance on hard-negative mining and dataset formatting for training.
- Includes instructions for hardware-specific configurations and Hugging Face Hub integration.
- Defines mandatory script requirements such as smoke testing, logging, and verdict reporting.
When to use it
- When you need to train or fine-tune a sentence-transformers model for retrieval, similarity, or ranking tasks.
- When you are unsure which model architecture (e.g., bi-encoder vs. cross-encoder) is best suited for your specific use case.
- When you require a structured, repeatable process for training and evaluating embedding models.
- When you need to integrate advanced training techniques like distillation, LoRA, or Matryoshka embeddings.
Advantages
- Enforces consistent training practices through standardized production templates.
- Reduces common errors by providing specific references for loss-to-data-shape mapping.
- Facilitates systematic experimentation with built-in logging and verdict reporting.
- Supports a wide range of model types including modern late-interaction and sparse architectures.
Usage examples
- “I need to train a bi-encoder for semantic search on my internal documentation.”
- The agent will identify the [SentenceTransformer] type, provide the relevant loss and evaluator references, and guide you to the bi-encoder production template.
- “How do I implement a two-stage retrieval system using a reranker?”
- The agent will direct you to the [CrossEncoder] documentation and template, explaining how to use it to score pairs for two-stage retrieval.
- “I want to train a SPLADE model for sparse retrieval.”
- The agent will provide the [SparseEncoder] references, including the required SpladeLoss wrapper and specific evaluators for sparse retrieval.
- “How can I improve my retrieval model using hard negatives?”
- The agent will guide you to the hard-negative mining script and explain how to generate n-tuple datasets for training.
Install
Download the skill as a ZIP:
https://mp-staging.autogineer.com/agent-skills/huggingface/train-sentence-transformers/downloadUnzip it into the cross-client skills folder of your project:
mkdir -p .agents/skills && unzip train-sentence-transformers.zip -d .agents/skills
Documentation by Hugging Face
Train a sentence-transformers Model
This SKILL.md is a router, not a manual. It tells you which references and example scripts to load for your task. The actual content (recommended losses, evaluators, training-script structure, model selection, training-arg knobs, troubleshooting) lives in references/ and scripts/.
Do not synthesize a training script from this file alone. Open the per-type production template (scripts/train_<type>_example.py) and copy it as your starting point. The templates contain load-bearing scaffolding (autocast helper, model-card class, logger silencing list, force=True, seed, TF32, version-compatible imports, named-evaluator metric handling) that prior agent runs have repeatedly missed when rolling their own from a synthesized snippet.
1. Identify the model type
| Tag | Class | What it does | When to pick |
|---|---|---|---|
| [SentenceTransformer] | SentenceTransformer (bi-encoder) | Maps each input to a fixed-dim dense vector | Retrieval, similarity, clustering, classification, paraphrase mining, dedup |
| [CrossEncoder] | CrossEncoder (reranker) | Scores (query, passage) pairs jointly | Two-stage retrieval (rerank top-100 from bi-encoder), pair classification |
| [SparseEncoder] | SparseEncoder (SPLADE) | Sparse vectors over the vocabulary | Learned-sparse retrieval, inverted-index backends (Elasticsearch / OpenSearch / Lucene) |
| [MultiVectorEncoder] | MultiVectorEncoder (ColBERT) | One embedding per token, scored with MaxSim | Late-interaction retrieval, recall gains over bi-encoders at higher storage cost, multimodal (ColPali / ColQwen2) |
Tiebreakers when the request is ambiguous: "embedding model" / "vector search" / "similarity" → [SentenceTransformer]. "rerank" / "ranker" / "two-stage" → [CrossEncoder]. "SPLADE" / "sparse" / "inverted index" → [SparseEncoder]. "ColBERT" / "late interaction" / "multi-vector" / "MaxSim" / "ColPali" / "ColQwen" → [MultiVectorEncoder]. If still unclear, ask.
2. Required reading
Read these in full before writing any code. Do not triage by perceived relevance.
Per-type: always required
[SentenceTransformer]
references/losses_sentence_transformer.md: loss-to-data-shape mapping,BatchSamplers.NO_DUPLICATESrequirement for MNRL-family,Cached*↔gradient_checkpointingincompatibility.references/evaluators_sentence_transformer.md: evaluator-to-task mapping,metric_for_best_modelkey construction (named vs unnamed), per-evaluatorprimary_metricvalues.references/model_architectures.md: encoder vs decoder vs static vs Router pipelines, pooling rules (mean / cls / lasttoken), auto-mean-pooling behavior for fresh-start MLM bases.scripts/train_sentence_transformer_example.py: production template. Copy this as your starting point.
[CrossEncoder]
references/losses_cross_encoder.md: pointwise / pairwise / listwise / distillation,pos_weightderivation,activation_fn=Identity()mandatory for non-BCE losses (silent eval-rank collapse otherwise).references/evaluators_cross_encoder.md:CrossEncoderRerankingEvaluatorrecipe, named-evaluator key formateval_{name}_{primary_metric}.scripts/train_cross_encoder_example.py: production template. Copy this as your starting point.
[SparseEncoder]
references/losses_sparse_encoder.md:SpladeLosswrapper requirement, FLOPS regularizer weights, smoke-test active-dim ramp behavior.references/evaluators_sparse_encoder.md:SparseNanoBEIREvaluator(English-only) and the in-domain alternative,eval_{name}_{primary_metric}key format.scripts/train_sparse_encoder_example.py: production template. Copy this as your starting point.
[MultiVectorEncoder]
references/losses_multi_vector_encoder.md: MaxSim scoring, scale choice per scoring mode (scale=1.0for MaxSim, roughly the average query length for MeanMaxSim), MNRL / CachedMNRL / MarginMSE / DistillKLDiv, XTR-vs-ColBERT scoring, CachedMNRL ↔gradient_checkpointingincompatibility.references/evaluators_multi_vector_encoder.md:MultiVectorNanoBEIREvaluator(English-only) and the in-domain alternative,eval_NanoBEIR_mean_maxsim_ndcg@10key format, distillation-eval spearman variant.scripts/train_multi_vector_encoder_example.py: production template. Copy this as your starting point.
Cross-cutting: always required (regardless of task)
references/training_args.md:TrainingArgumentsknobs, precision rules (load fp32 + autocast bf16/fp16, nevertorch_dtype=bfloat16),warmup_steps(float) vs deprecatedwarmup_ratio,save_stepsmust be a multiple ofeval_stepsforload_best_model_at_end, schedulers, HPO, tracker, resume, hub-push variants.references/dataset_formats.md: column-matching rules (label name auto-detection, column-order-not-name), reshaping recipes, hard-negative mining options.references/base_model_selection.md: discovery commands, per-type model namespaces, ModernBERT-familymax_seq_length=8192trap,datasets >= 4script-loader rejection, non-English starting-point shortcuts.references/troubleshooting.md: symptom-indexed failure recipes. Skim the section headings on every run, even a healthy one. The "Metrics don't improve" and "Hub push fails" entries cover bugs that bite frequently and are cheaper to recognize before they fire than to debug after.
Cross-cutting: load when applicable
references/hardware_guide.md: VRAM sizing, multi-GPU, FSDP / DeepSpeed, HF Jobs flavors. Required for >24GB models, multi-GPU, or HF Jobs runs.references/hf_jobs_execution.md: required when running on HF Jobs.references/prompts_and_instructions.md: required when using prompt-tuned bases (E5, BGE, GTE, Qwen3-Embedding, Instructor, Nomic, etc.) or addingquery:/passage:style prefixes.
Variant scripts (open when the task matches)
[SentenceTransformer]
scripts/train_sentence_transformer_<matryoshka|multi_dataset|with_lora|distillation|make_multilingual|static_embedding>_example.py.[CrossEncoder]
scripts/train_cross_encoder_<distillation|listwise>_example.py.[SparseEncoder]
scripts/train_sparse_encoder_distillation_example.py.Hard-negative mining CLI:
scripts/mine_hard_negatives.py.
3. Defaults
Override only if the user specifies otherwise:
Local execution. Pitch HF Jobs only if local hardware can't fit the job.
Single run. After it completes, propose experimentation if the user would benefit (weak/marginal verdict, "see how high you can push it" framing, etc.). Iteration rules in
references/training_args.md(Experimentation section).Public Hub push at end-of-run, wrapped in try-except. On HF Jobs (ephemeral env) ALSO enable in-trainer push (
push_to_hub=True+hub_strategy="every_save"). Details inreferences/hf_jobs_execution.md.
4. Constraints the produced script must satisfy
These are non-negotiable contracts. Implementation lives in the production templates and references. Do not reinvent.
Capture the pre-training evaluator score as
baseline_evalbeforetrainer.train().Emit a single end-of-run line:
VERDICT: WIN|MARGINAL|REGRESSION | score=... | baseline=... | delta=.... A monitor scrapes for this.Silence
httpx,httpcore,huggingface_hub,urllib3,filelock,fsspecto WARNING (otherwise HF download URLs flood the agent's context).Tee logs to
logs/{RUN_NAME}.log.End with
model.push_to_hub(...)wrapped intry/except.Smoke-test before any long run (
max_steps=1+ tiny dataset slice). The production templates show one common pattern (SMOKE_TESTenv var).[CrossEncoder] Include
EarlyStoppingCallback(patience>=3). CE rerankers often peak mid-training and regress.[SparseEncoder] Log
query_active_dims/corpus_active_dimson the verdict line. High nDCG with collapsed sparsity is not a win. The keys come back name-prefixed (e.g...._query_active_dims). Use suffix matching to pluck them. See the SPARSE production template for the exact pattern.[MultiVectorEncoder] Match
scaleto the scoring mode on any MNRL-family loss: near1.0for unnormalized MaxSim (do not copyscale=20.0from bi-encoder MNRL), roughly the average query length with length-normalized MeanMaxSim, since each score is divided by its query's token count.XTRScoresis a train-onlysimilarity_fct: the evaluators reject it, so evaluation always scores with MaxSim, including for XTR-trained models.
5. Workflow
Identify the model type (§1). Ask if ambiguous.
Load the §2 required-reading files for that type.
Open
scripts/train_<type>_example.pyand copy it as your starting point.Replace
MODEL_NAME,DATASET_NAME,RUN_NAME, the loss, and the evaluator with the user's task. Cross-check loss/data-shape match againstreferences/losses_<type>.md. Cross-check themetric_for_best_modelkey againstreferences/evaluators_<type>.md(named evaluators format the key aseval_{name}_{primary_metric}).Smoke-test (
max_steps=1).Run.
After the run, append to
logs/experiments.mdand propose iteration if the verdict is weak/marginal.
Prerequisites
pip install "sentence-transformers[train]>=5.0" # add [train,image] / [audio] / [video] for [SentenceTransformer] multimodal
# [MultiVectorEncoder] requires >=6.0
pip install trackio # optional tracker (or wandb / tensorboard / mlflow)
hf auth login # or set HF_TOKEN with write scope (for Hub push)GPU strongly recommended. CPU works only for demos and [SentenceTransformer] StaticEmbedding.
Files
- ATTRIBUTION.mdAdded by AutoGineer898 B
- LICENSELicence file added by AutoGineer11.1 KiB
- SKILL.md10.3 KiB
- references/base_model_selection.md7.5 KiB
- references/dataset_formats.md6.3 KiB
- references/evaluators_cross_encoder.md5.5 KiB
- references/evaluators_multi_vector_encoder.md6.6 KiB
- references/evaluators_sentence_transformer.md5.8 KiB
- references/evaluators_sparse_encoder.md4.9 KiB
- references/hardware_guide.md5.9 KiB
- references/hf_jobs_execution.md7.1 KiB
- references/losses_cross_encoder.md9.5 KiB
- references/losses_multi_vector_encoder.md10.5 KiB
- references/losses_sentence_transformer.md10.7 KiB
- references/losses_sparse_encoder.md5.1 KiB
- references/model_architectures.md9.0 KiB
- references/prompts_and_instructions.md6.4 KiB
- references/training_args.md15.0 KiB
- references/troubleshooting.md12.9 KiB
- scripts/mine_hard_negatives.pyScript8.3 KiB
- scripts/train_cross_encoder_distillation_example.pyScript9.2 KiB
- scripts/train_cross_encoder_example.pyScript9.0 KiB
- scripts/train_cross_encoder_listwise_example.pyScript10.2 KiB
- scripts/train_multi_vector_encoder_example.pyScript8.8 KiB
- scripts/train_sentence_transformer_distillation_example.pyScript11.9 KiB
- scripts/train_sentence_transformer_example.pyScript7.5 KiB
- scripts/train_sentence_transformer_make_multilingual_example.pyScript11.5 KiB
- scripts/train_sentence_transformer_matryoshka_example.pyScript7.1 KiB
- scripts/train_sentence_transformer_multi_dataset_example.pyScript9.9 KiB
- scripts/train_sentence_transformer_static_embedding_example.pyScript10.3 KiB
- scripts/train_sentence_transformer_with_lora_example.pyScript10.3 KiB
- scripts/train_sparse_encoder_distillation_example.pyScript9.4 KiB
- scripts/train_sparse_encoder_example.pyScript8.1 KiB
scripts/train_cross_encoder_example.py
#!/usr/bin/env python3
# /// script
# requires-python = ">=3.10"
# dependencies = [
# "sentence-transformers[train]>=5.0",
# "datasets>=2.19.0",
# "accelerate>=0.26.0",
# "trackio",
# ]
# ///
"""Production-ready cross-encoder (reranker) training template.
Demonstrates:
- BinaryCrossEntropyLoss on (query, passage, label) pointwise data
- Hard-negative mining (`mine_hard_negatives` with `output_format="labeled-pair"`)
to produce the labeled training data BCE needs, starting from (question, answer)
pairs
- `pos_weight=num_negatives` to offset the positive/negative imbalance
- CrossEncoderNanoBEIREvaluator for retrieval reranking metrics
- load_best_model_at_end on the retrieval metric
- Auto model card + optional Hub push
Run locally:
pip install "sentence-transformers[train]>=5.0"
python train_cross_encoder_example.py
Multi-GPU:
accelerate launch train_cross_encoder_example.py
Hugging Face Jobs: paste this file's contents as the `script` in hf_jobs(...).
"""
from __future__ import annotations
import argparse
import logging
import os
from contextlib import nullcontext
import torch
from datasets import load_dataset, load_from_disk
from transformers import EarlyStoppingCallback
from sentence_transformers import (
CrossEncoder,
CrossEncoderModelCardData,
CrossEncoderTrainer,
CrossEncoderTrainingArguments,
SentenceTransformer,
)
from sentence_transformers.cross_encoder.evaluation import CrossEncoderNanoBEIREvaluator
from sentence_transformers.cross_encoder.losses import BinaryCrossEntropyLoss
from sentence_transformers.util import mine_hard_negatives
def autocast_ctx():
"""bf16/fp16 autocast for evaluator calls outside the trainer (which has its own autocast)."""
if not torch.cuda.is_available():
return nullcontext()
dtype = torch.bfloat16 if torch.cuda.is_bf16_supported() else torch.float16
return torch.autocast("cuda", dtype=dtype)
def log_trackio_dashboard():
"""Surface the Trackio dashboard URL so the user can watch training live."""
try:
from huggingface_hub import whoami
hf_user = whoami().get("name")
if hf_user:
logging.info(
f"Trackio dashboard (live training progress): https://huggingface.co/spaces/{hf_user}/trackio"
)
except Exception:
pass
MODEL_NAME = "microsoft/MiniLM-L12-H384-uncased"
DATASET_NAME = "sentence-transformers/gooaq"
RETRIEVER_NAME = "sentence-transformers/static-retrieval-mrl-en-v1"
TRAIN_SIZE = 100_000
EVAL_SIZE = 1_000
NUM_NEGATIVES = 5
OUTPUT_DIR = "models/minilm-gooaq-ce"
RUN_NAME = "minilm-gooaq-ce"
HARD_NEG_CACHE = f"data/{RUN_NAME}-hard-negatives" # delete this dir to remine
SMOKE_TEST = os.environ.get("SMOKE_TEST") == "1"
def setup_logging():
"""Configure logging + TF32. Tees to logs/{RUN_NAME}.log and silences HTTP spam."""
os.makedirs("logs", exist_ok=True)
logging.basicConfig(
format="%(asctime)s - %(message)s",
datefmt="%Y-%m-%d %H:%M:%S",
level=logging.INFO,
handlers=[logging.StreamHandler(), logging.FileHandler(f"logs/{RUN_NAME}.log")],
force=True,
)
for noisy in ("httpx", "httpcore", "huggingface_hub", "urllib3", "filelock", "fsspec"):
logging.getLogger(noisy).setLevel(logging.WARNING)
if torch.cuda.is_available():
torch.set_float32_matmul_precision("high") # TF32 on Ampere+, no quality loss
def main() -> None:
parser = argparse.ArgumentParser()
parser.add_argument(
"--eval-only", type=str, default=None, help="Skip training; load this saved model and run only the evaluator."
)
cli, _ = parser.parse_known_args()
setup_logging()
if cli.eval_only:
logging.info(f"Eval-only mode: loading model from {cli.eval_only}")
model = CrossEncoder(cli.eval_only)
evaluator = CrossEncoderNanoBEIREvaluator(dataset_names=["msmarco", "nfcorpus", "nq"])
with autocast_ctx():
evaluator(model)
return
logging.info(f"Loading base model: {MODEL_NAME}")
model = CrossEncoder(
MODEL_NAME,
num_labels=1,
model_card_data=CrossEncoderModelCardData(
language="en",
license="apache-2.0",
model_name=f"{MODEL_NAME.split('/')[-1]} reranker finetuned on GooAQ",
),
)
logging.info(f"Loading dataset: {DATASET_NAME}")
train_size = 50 if SMOKE_TEST else TRAIN_SIZE
eval_size = 20 if SMOKE_TEST else EVAL_SIZE
if SMOKE_TEST:
logging.info("SMOKE_TEST=1: trimmed dataset; will run max_steps=1 and skip Hub push")
pairs = load_dataset(DATASET_NAME, split="train").select(range(train_size + eval_size))
if os.path.isdir(HARD_NEG_CACHE):
logging.info(f"Loading cached mined hard negatives from {HARD_NEG_CACHE}")
labeled = load_from_disk(HARD_NEG_CACHE)
else:
logging.info(f"Mining hard negatives with {RETRIEVER_NAME}")
retriever = SentenceTransformer(RETRIEVER_NAME)
labeled = mine_hard_negatives(
dataset=pairs,
model=retriever,
num_negatives=NUM_NEGATIVES,
range_min=10, # skip the top-10 (likely to contain true positives)
range_max=100,
sampling_strategy="top",
output_format="labeled-pair",
use_faiss=True,
)
labeled.save_to_disk(HARD_NEG_CACHE)
logging.info(f"Saved mined dataset to {HARD_NEG_CACHE} (delete to remine)")
del retriever
torch.cuda.empty_cache()
# EVAL_SIZE here counts labeled-pair rows, not distinct queries: each
# query contributes 1 positive + NUM_NEGATIVES negatives, so e.g. 1000
# rows is approximately 1000 / (1 + NUM_NEGATIVES) distinct queries.
split = labeled.train_test_split(test_size=eval_size, seed=12)
train_dataset = split["train"]
eval_dataset = split["test"]
logging.info(f" train: {len(train_dataset):,} rows | eval: {len(eval_dataset):,} rows")
logging.info(f" columns: {train_dataset.column_names}")
# pos_weight = negatives / positives, derived from the actual label distribution
# so it stays correct if rows get filtered or the mining ratio drifts.
n_pos = sum(1 for label in train_dataset["label"] if label > 0.5)
n_neg = len(train_dataset) - n_pos
pos_weight_value = n_neg / max(n_pos, 1)
logging.info(f" positives: {n_pos:,} | negatives: {n_neg:,} | pos_weight: {pos_weight_value:.2f}")
loss = BinaryCrossEntropyLoss(model, pos_weight=torch.tensor(pos_weight_value))
evaluator = CrossEncoderNanoBEIREvaluator(dataset_names=["msmarco", "nfcorpus", "nq"])
logging.info("Baseline evaluation:")
with autocast_ctx():
# Must run before deriving metric_key: evaluator(model) mutates primary_metric to add the name_ prefix.
baseline_eval = evaluator(model)[evaluator.primary_metric]
metric_key = f"eval_{evaluator.primary_metric}"
args = CrossEncoderTrainingArguments(
output_dir=OUTPUT_DIR,
num_train_epochs=1,
max_steps=1 if SMOKE_TEST else -1,
per_device_train_batch_size=64,
per_device_eval_batch_size=64,
learning_rate=2e-5,
weight_decay=0.01,
warmup_steps=0.1,
lr_scheduler_type="linear",
bf16=True,
eval_strategy="steps",
eval_steps=0.1,
save_strategy="steps",
save_steps=0.1,
save_total_limit=2,
logging_steps=0.01,
logging_first_step=True,
load_best_model_at_end=True,
metric_for_best_model=metric_key,
greater_is_better=True,
report_to="none" if SMOKE_TEST else "trackio",
run_name=RUN_NAME,
seed=12,
)
# EarlyStoppingCallback earns its keep for cross-encoders: CE rerankers
# typically peak mid-training and then degrade, so stopping at the best
# eval checkpoint is load-bearing (unlike bi-encoders, which tend to
# plateau rather than regress).
trainer = CrossEncoderTrainer(
model=model,
args=args,
train_dataset=train_dataset,
eval_dataset=eval_dataset,
loss=loss,
evaluator=evaluator,
callbacks=[EarlyStoppingCallback(early_stopping_patience=3)],
)
if not SMOKE_TEST:
log_trackio_dashboard()
trainer.train()
logging.info("Post-training evaluation:")
with autocast_ctx():
score = evaluator(model)[evaluator.primary_metric]
delta = score - baseline_eval
verdict = "WIN" if delta >= 0.005 else "MARGINAL" if delta >= 0 else "REGRESSION"
logging.info(f"VERDICT: {verdict} | score={score:.4f} | baseline={baseline_eval:.4f} | delta={delta:+.4f}")
final_dir = f"{OUTPUT_DIR}/final"
model.save_pretrained(final_dir)
logging.info(f"Saved final model to {final_dir}")
if SMOKE_TEST:
logging.info("SMOKE_TEST=1: skipping Hub push")
return
try:
commit_url = model.push_to_hub(RUN_NAME)
logging.info(f"Pushed model to {commit_url.rsplit('/commit/', 1)[0]}")
except Exception:
import traceback
logging.error(f"Hub push failed:\n{traceback.format_exc()}")
if __name__ == "__main__":
main()
Requirements and compatibility
Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta
“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.
Needs: Needs Python
Security
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This skill includes scripts that your agent may run. Read them before you use it.
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Attribution and licence
- Published by
- Hugging Face
- Publisher
- Hugging Face (Official)
- Source
- huggingface/skills · skills/train-sentence-transformers · commit 25910b3
- Licence
- Apache License 2.0 (redistribution allowed)
- LICENSE (added by AutoGineer from LICENSE)
- ATTRIBUTION.md (written by AutoGineer)
- Synced
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