Pybamm
K-DenseCommunityCreated by K-Dense Inc.
- Skill
- Workflow
- Science and research
- MIT
- Low risk
- Has scripts
AutoGineer summary
Written by AutoGineer from the skill’s own files, not by the author
This skill provides a structured workflow for simulating single-cell lithium-ion battery experiments using PyBaMM. It supports SPM and DFN electrochemical models to simulate charge, discharge, and rest protocols. The tool automates the execution of simulations, performs numerical sensitivity analysis by comparing results across different solver tolerances and mesh resolutions, and generates detailed reports including parameter provenance and voltage curve comparisons against measured data.
What it does
- Simulates battery charge, discharge, and rest experiments using SPM or DFN models.
- Validates simulation protocols against defined JSON contracts.
- Performs numerical sensitivity analysis by varying solver tolerances and mesh density.
- Compares predicted voltage curves against user-supplied cycling data.
- Records parameter-set provenance and simulation metadata.
- Exports detailed reports including voltage residuals and event-time differences.
When to use it
- When you need to model single-cell battery behavior under specific current protocols.
- When comparing electrochemical model predictions (SPM/DFN) against experimental cycling data.
- When performing numerical validation to ensure simulation results are independent of mesh and solver settings.
- When you need to track parameter-set snapshots after SOC initialization.
Advantages
- Automates the comparison between baseline, high-tolerance, and refined-mesh simulations.
- Provides clear metrics for voltage RMSE, MAE, and bias.
- Ensures reproducibility by snapshotting parameters after SOC initialization.
- Strict protocol validation prevents common configuration errors.
Usage examples
- “Run a simulation for a 0.5C discharge protocol using the Chen2020 parameter set.”
- The tool executes the simulation, generates a baseline curve, and outputs a report including parameter snapshots and numerical validation results.
- “Compare my measured cycling data in measured.csv against an SPM model prediction.”
- The tool runs the SPM simulation, calculates voltage residuals against the provided CSV, and generates a measurement-residuals.csv file.
Install
Download the skill as a ZIP:
https://mp-staging.autogineer.com/agent-skills/k-dense-ai/pybamm/downloadUnzip it into the cross-client skills folder of your project:
mkdir -p .agents/skills && unzip pybamm.zip -d .agents/skills
Documentation by K-Dense Inc.
PyBaMM battery experiments
When to use
Use this skill to model single-cell constant-current charge/discharge and rest, examine voltage and charge trajectories, or compare SPM/DFN predictions to cycling measurements. The helper runs real PyBaMM experiments and three numerical resolutions; it does not control a battery cycler or establish an operating envelope for hardware.
Runtime and tested case
uv venv --python 3.12 battery-env
uv pip install --python battery-env/bin/python pybamm==26.9.0.0 pybammsolvers==0.10.0This release requires pybammsolvers>=0.10.0, NumPy 2 or newer, and CasADi 3.8.1.
The tested environment used Python 3.12.10, NumPy 2.5.3 and SciPy 1.18.1. IDAKLU is the
recommended solver; CasadiSolver and ScipySolver are deprecated in this release. Refer to
the 26.9.0.0 manual below, since latest can describe unreleased APIs.
The included assets/chen2020-protocol.json is a synthetic isothermal 298.15-K SPM case: 80% initial SOC, discharge at 0.5C for 600 s, rest for 120 s, charge at 0.5C for 600 s. Chen2020 supplies an LG M50 parameterization with 5-Ah nominal capacity; here 0.5C means 2.5 A. This is an executable reference example, not a claim that an arbitrary user's cell has those parameters. The helper disables PyBaMM usage telemetry unless the caller has already explicitly configured that variable.
Workflow
Establish the cell chemistry, geometry, nominal capacity, initial state, temperature and current-sign convention. Use an appropriate parameter set and explain its source. Distinguish a paper's fitted parameters from measurements of this particular cell. Do not transplant degradation parameters without checking their meaning and applicable conditions.
Convert the requested protocol to the JSON contract in references/protocol-and-comparison.md. Positive simulation current discharges; negative current charges. Every step has a finite duration. A specified voltage cutoff can end it earlier; the report records actual termination times. C-rates use the selected set's nominal capacity. A change in that capacity changes current.
Choose SPM when its reduced transport assumptions are adequate; use DFN when resolving electrolyte/electrode transport matters. The helper's tested models are isothermal and exclude aging, mechanics, plating and pack control. Increasing rate can invalidate SPM predictions even if numerical convergence is excellent.
Run the helper. It validates protocol fields, rejects unknown or overridden-by-protocol parameter inputs, uses IDAKLU, and snapshots the base parameters after SOC initialization. Keep the protocol with that snapshot: experiment steps supply their own currents. Infeasible or skipped steps are errors, rather than silently presenting a partial protocol as complete.
Read the two numerical comparisons separately: baseline versus tighter tolerances isolates solver error; tight tolerances on the original versus doubled mesh isolates discretization. Compare voltage differences and event-time differences against the accuracy the question needs. Refine again when these are too large; one doubling does not prove convergence.
If measurements are available, check current, time origin, temperature, SOC and capacity before interpreting residuals. Supply matching seconds, volts and amps. The helper reports voltage RMSE/MAE/bias and current RMSE, preserving residuals. A small voltage error under a mismatched input current does not validate the model. This workflow compares curves; it does not claim to identify unique kinetic parameters from voltage alone.
Run and inspect
From the skill directory, point battery-env/bin/python at the environment created above:
battery-env/bin/python scripts/simulate_battery.py assets/chen2020-protocol.json \
--output battery-reference
# measured.csv is user data with time_s,voltage_V,current_A columns.
battery-env/bin/python scripts/simulate_battery.py protocol.json \
--measured measured.csv --mesh-points 30 --output battery-comparisonThe first command was executed as written with an external output location. The second uses illustrative user filenames; the measurement path was exercised against a frozen synthetic reference curve in the tests. Output directories must be new.
| Artifact | Interpretation |
|---|---|
curve.csv | Baseline time, step, voltage, current and net discharge capacity |
tight-tolerance.csv | Same mesh, tighter solver |
refined-mesh.csv | Doubled mesh with tighter solver |
parameters.json | Base parameters after SOC initialization; step currents remain in the protocol |
report.json | Protocol/checksum, package versions, parameter source, numerical comparisons and terminations |
measurement-residuals.csv | Prediction minus measurement and current mismatch, when measurements were supplied |
The reference case conserved integrated charge: 600 s at 2.5 A yielded 0.4166667 Ah, then equal charge returned net discharge capacity to zero. Voltage stayed within the Chen2020 limits in this case. Tightening tolerances changed voltage by about 1 microvolt; doubling mesh from 20 to 40 points changed it by about 2.17 mV, so claiming sub-millivolt mesh accuracy would be unjustified. A separate real DFN test stopped at the requested 3.9-V event and verified its charge integral. Native tests also exercise charge cutoff, infeasible discharge, capacity-to-current conversion, and replay of the exported SOC-adjusted parameters without reinitializing SOC. The frozen reference is numerical regression evidence, not measured-cell validation.
Primary references
The linked release manuals, bundled helper, parameter serialization and optional DataLoader recipe in the reference were verified against PyBaMM 26.9.0.0.
Files
- ATTRIBUTION.mdAdded by AutoGineer904 B
- LICENSELicence file added by AutoGineer1.0 KiB
- SKILL.md7.1 KiB
- assets/chen2020-protocol.json340 B
- references/protocol-and-comparison.md8.1 KiB
- scripts/simulate_battery.pyScript12.9 KiB
assets/chen2020-protocol.json
{
"model": "SPM",
"parameter_set": "Chen2020",
"initial_soc": 0.8,
"temperature_K": 298.15,
"sample_period_s": 10.0,
"parameter_overrides": {},
"steps": [
{"kind": "discharge", "c_rate": 0.5, "duration_s": 600.0},
{"kind": "rest", "duration_s": 120.0},
{"kind": "charge", "c_rate": 0.5, "duration_s": 600.0}
]
}
Requirements and compatibility
Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta
“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.
Needs: Needs Python
The author says: Requires Python 3.12 with PyBaMM 26.9.0.0 and pybammsolvers 0.10.0 (IDAKLU). NumPy and CasADi are supplied by PyBaMM. Network is needed for installation and optional upstream dataset retrieval; bundled simulations and CSV comparisons run locally without credentials.
Security
What our scanner noticed· Low risk
- Instructions that use the network
- Scripts that your agent may run
This skill includes scripts that your agent may run. Read them before you use it.
A static scan is not a guarantee. Skills are third-party content: review a skill before you let an agent use it.
Attribution and licence
- Created by
- K-Dense Inc.
- Publisher
- K-Dense (Community)
- Source
- K-Dense-AI/scientific-agent-skills · skills/pybamm · commit a25cf9e
- Licence
- MIT License (redistribution allowed)
- LICENSE (added by AutoGineer from LICENSE.md)
- ATTRIBUTION.md (written by AutoGineer)
- Synced
AutoGineer is not affiliated with or endorsed by K-Dense Inc. or K-Dense.
Download ZIP
The ZIP holds the skill’s files, its licence files and an ATTRIBUTION.md. Download pybamm.zip