Matlab Analyze Time Frequency Content
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This skill provides a comprehensive framework for analyzing how frequency content evolves over time using MATLAB. It covers a wide range of analytical techniques including Short-Time Fourier Transform (STFT), Continuous Wavelet Transform (CWT), synchrosqueezing, reassignment, and adaptive signal decomposition (EMD/VMD). The skill is designed to help users select the appropriate method based on their specific signal characteristics and research goals, offering guidance on visualization, mode extraction, and cross-signal analysis.
What it does
- Visualizes time-frequency content using spectrograms and scalograms.
- Supports advanced signal decomposition via EMD, VMD, and multiresolution analysis.
- Enables mode extraction and signal reconstruction from time-frequency representations.
- Computes time-varying coherence and cross-spectra between two signals.
- Provides diagnostic tools to assess signal properties before analysis.
- Offers a decision logic for choosing between STFT, CWT, and other transform methods.
When to use it
- When you need to analyze the evolution of frequency content over time.
- When choosing between different time-frequency representations like STFT or CWT.
- When you need to extract and reconstruct individual signal components.
- When comparing two signals using time-varying coherence or cross-spectrum analysis.
- When decomposing signals into additive time-domain components.
Advantages
- Provides a structured decision tree for selecting the optimal analysis method.
- Includes diagnostic scripts to assess signal length, bandwidth, and nonstationarity.
- Supports both interactive exploration and programmatic data analysis.
- Clearly distinguishes between invertible and non-invertible analysis techniques.
- Offers specific guidance on handling boundary effects and frequency resolution.
Usage examples
- “How do I visualize the time-frequency content of a non-stationary signal?”
- The agent will recommend using signalAnalyzer for interactive exploration or cwt for multi-resolution visualization, depending on the signal's bandwidth.
- “I need to extract a specific mode from my signal using synchrosqueezing.”
- The agent will guide you through the fsst or wsst workflow, including ridge extraction and subsequent signal reconstruction.
- “How can I compare the time-varying coherence of two signals?”
- The agent will provide the wcoherence syntax and explain how to interpret the phase arrows and coherence magnitude.
- “What is the best way to decompose a signal into adaptive components?”
- The agent will recommend emd or vmd based on whether the number of components is known and provide the necessary function calls.
Install
1 of its files are not mirrored here, so install it from its source:
https://github.com/matlab/matlab-agentic-toolkit/tree/2a7f215e965597acf6ed495beb9e7b8aff45a3be/skills-catalog/signal-processing/matlab-analyze-time-frequency-content
Documentation by MathWorks
Time-Frequency Analysis in MATLAB
Analyze how frequency content evolves over time using STFT, CWT, synchrosqueezing, reassignment, cross-signal methods, and data-adaptive decomposition.
Agent directive: Consult the reference guides in
references/before answering. Each guide covers a specific domain with syntax, gotchas, and common mistakes.
When To Use
Analyzing how frequency content evolves over time (spectrogram, scalogram)
Choosing between STFT, CWT, synchrosqueezing, reassignment, or EMD/VMD
Extracting and reconstructing individual signal components from a TF representation
Computing time-varying coherence or cross-spectrum between two signals
Decomposing signals into additive time-domain components (wavelet MRA, EMD, VMD)
Estimating instantaneous frequency or Hilbert spectrum
When Not To Use
Designing or applying classical FIR/IIR filters — use
matlab-design-digital-filterExtracting scalar features for ML classification — use
matlab-extract-signal-featuresSignal preprocessing (resampling, detrending, gap filling) — use
matlab-prepare-signal-dataQuadratic/bilinear TFDs (Wigner-Ville) — not supported in MATLAB toolboxes
Audio-specific representations (mel spectrogram, MFCC) — use Audio Toolbox
Method Selection
Choose the analysis method based on the user's goal and signal characteristics:
| Goal | Method | Guide |
|---|---|---|
| Interactive TF exploration (spectrogram + scalogram) | signalAnalyzer | — |
| General TF visualization (uniform freq resolution) | stft, spectrogram, pspectrum | references/stft-guide.md |
| TF visualization (multi-resolution, constant-Q) | cwt, cwtfilterbank | references/cwt-guide.md |
| Sharpest TF picture (non-invertible) | spectrogram("reassigned"), pspectrum(Reassigned=true) | references/reassignment-guide.md |
| Remove specific TF regions (mask-based filtering) | tffilt with binary mask | references/stft-guide.md |
| Mode extraction + reconstruction (STFT domain) | fsst → tfridge → ifsst | references/reassignment-guide.md |
| Mode extraction + reconstruction (CWT domain) | wsst → wsstridge → iwsst | references/reassignment-guide.md |
| Signal reconstruction from CWT | icwt (exact or approximate) | references/cwt-guide.md |
| Additive decomposition (octave bands) | modwt + modwtmra | references/multiresolution-guide.md |
| Additive decomposition (uniform bands) | modwptdetails | references/multiresolution-guide.md |
| Adaptive decomposition (unknown components) | emd | references/multiresolution-guide.md |
| Adaptive decomposition (known mode count) | vmd | references/multiresolution-guide.md |
| Hilbert spectrum / instantaneous frequency | hht, instfreq | references/multiresolution-guide.md |
| Time-varying coherence between two signals | wcoherence | references/cross-analysis-guide.md |
| Cross spectrogram between two signals | xspectrogram | references/cross-analysis-guide.md |
| Global coherence (no time axis) | mscohere, cpsd | references/cross-analysis-guide.md |
For detailed decision logic, see references/method-selection-guide.md.
Quick Decision Tree
What is the primary goal?
│
├── Interactive exploration (adjust parameters, compare views)
│ └── signalAnalyzer — supports spectrogram + scalogram (CWT) side by side
│
├── Visualize one signal's TF content
│ ├── Need uniform frequency resolution? → stft / spectrogram / pspectrum
│ ├── Need multi-resolution (better low-freq)? → cwt
│ └── Need sharpest picture (no reconstruction)? → spectrogram("reassigned")
│
├── Remove unwanted content visible in spectrogram
│ └── Define binary mask over TF plane → tffilt (Gabor domain)
│
├── Extract and reconstruct individual components
│ ├── From TF representation (invertible)?
│ │ ├── STFT domain → fsst → tfridge → ifsst
│ │ └── CWT domain → wsst → wsstridge → iwsst
│ ├── Additive time-domain components?
│ │ ├── Octave bands → modwt + modwtmra
│ │ ├── Uniform bands → modwptdetails
│ │ └── Data-adaptive → emd or vmd
│ └── From CWT directly? → icwt (see references/cwt-guide.md)
│
├── Compare two signals
│ ├── Time-varying coherence? → wcoherence
│ ├── Time-varying cross-spectrum? → xspectrogram
│ └── Global relationship? → mscohere / cpsd
│
└── Estimate instantaneous frequency
├── Single monocomponent signal? → instfreq(x, fs)
├── Multicomponent (want per-mode IF)? → emd → instfreq(imf, fs)
└── Multicomponent (want single average)? → instfreq(x, fs, Method="tfmoment")Critical Rules
stfthas no reassignment option. Usefsstfor invertible synchrosqueezing orspectrogram("reassigned")for non-invertible visualization.wsstridgeargument order differs fromtfridge:wsstridge(sst, penalty, f, ...)— penalty is 2nd positional argtfridge(tfm, f, penalty, ...)— penalty is 3rd positional arg
wsstsubtracts the signal mean internally.iwsstdoes NOT restore it. Addmean(x)back manually if DC matters.ifsstis machine-precision;iwsstis approximate (Morlet single-integral formula).xspectrogramfirst output is real (cross-spectrogram magnitude). For phase, use the 4th outputP. This differs fromspectrogramwhose first output is complex STFT.wcoherencehas noParentoption. For App Designer, compute outputs and plot manually.wcoherencephase arrows show the phase lag of Y relative to X:↑ = Y lags X by π/2
↓ = Y leads X by π/2
→ = in-phase
← = anti-phase
PhaseDisplayThreshold(default 0.5) is plot-only — it controls which arrows are drawn but has no effect on returned numeric outputs.
hhttakes IMFs, not raw signal. Always decompose first:imf = emd(x); hht(imf, fs).instfreqHilbert method is meaningless for multicomponent signals. Decompose first, or useMethod="tfmoment"for a single average curve.Synchrosqueezing is precision-sensitive. Use double-precision data with
fsst/wsstfor reproducible results across MATLAB, codegen, and GPU.
Signal Assessment Workflow
When the user provides a signal and asks "what should I use?", run the assessment script then apply agent-side interpretation:
Step 1: Run MATLAB assessment
report = assessSignalForTF(x, fs);
disp(report)
disp(report.recommendations)The script returns: signal length, occupied bandwidth, number of spectral peaks (with frequencies), nonstationarity indicator, DC content, precision, and auto-generated recommendations.
Step 2: Agent-side interpretation (combine script output with user goals)
| User Goal | Key Report Fields | Recommendation Logic |
|---|---|---|
| "Explore / I'm not sure what I need" | — | Suggest signalAnalyzer for interactive exploration (spectrogram + scalogram views, adjustable parameters) |
| "Visualize frequency content over time" | likelyNonstationary, fractionalBandwidth | If wideband (>2 octaves): cwt. If narrowband or uniform resolution needed: stft/spectrogram |
| "Separate/extract components" | numSpectralPeaks, peakFrequenciesHz | 2–3 peaks: synchrosqueezing (fsst/wsst). Many peaks: emd/vmd. Closely-spaced: modwptdetails or fsst |
| "Reconstruct after filtering" | hasDC, precision | fsst/ifsst for exact. wsst/iwsst for CWT-domain (warn about mean). icwt for CWT bandpass |
| "Compare two signals" | (run on both) | wcoherence for coherence. xspectrogram for cross-spectrum |
| "Detect transients/events" | signalLength, occupiedBandHz | cwt with low TimeBandwidth. Or short-window stft |
Step 3: Refine with follow-up questions if ambiguous
"Do you need to reconstruct the signal, or just visualize?"
"Do you need uniform frequency resolution, or is multi-resolution acceptable?"
"Are you comparing this signal to another?"
Reference Guides
| File | Coverage |
|---|---|
references/stft-guide.md | stft/istft, spectrogram, pspectrum, stftmag2sig, length preservation, COLA |
references/cwt-guide.md | cwt, cwtfilterbank, icwt, dlicwt/icwtLayer, boundary, constant-Q |
references/reassignment-guide.md | fsst/ifsst, wsst/iwsst, spectrogram("reassigned"), pspectrum(Reassigned=true), ridge extraction, penalty |
references/cross-analysis-guide.md | wcoherence, xspectrogram, cpsd, mscohere, phase arrows, unsmoothed cross-spectrum |
references/multiresolution-guide.md | modwt/modwtmra, modwpt/modwptdetails, emd, vmd, hht, instfreq, instbw |
references/method-selection-guide.md | Decision logic for choosing among all methods |
Toolbox Requirements
| Toolbox | Functions |
|---|---|
| Signal Processing | stft, istft, spectrogram, pspectrum, fsst, ifsst, tfridge, xspectrogram, instfreq, instbw, stftmag2sig, cpsd, mscohere |
| Wavelet | cwt, cwtfilterbank, icwt, wsst, iwsst, wsstridge, wcoherence, modwt, modwtmra, modwpt, modwptdetails, emd, vmd, hht, tffilt, dgt |
| Function | Available From | Note |
|---|---|---|
tffilt | R2025a | TF mask-based filtering; all other functions available in R2024b |
Documentation References
| Topic | Link |
|---|---|
| Time-frequency gallery | https://www.mathworks.com/help/signal/time-frequency-analysis.html |
| Wavelet time-frequency | https://www.mathworks.com/help/wavelet/time-frequency-analysis.html |
| CWT reference | https://www.mathworks.com/help/wavelet/ref/cwt.html |
| STFT reference | https://www.mathworks.com/help/signal/ref/stft.html |
| Synchrosqueezing example | https://www.mathworks.com/help/wavelet/ug/time-frequency-reassignment-and-mode-extraction-with-synchrosqueezing.html |
| Wavelet coherence example | https://www.mathworks.com/help/wavelet/ug/compare-time-frequency-content-in-signals-with-wavelet-coherence.html |
Copyright 2026 The MathWorks, Inc.
Files
- ATTRIBUTION.mdAdded by AutoGineer1.1 KiB
- LICENSELicence file added by AutoGineer1.4 KiB
- SKILL.md10.7 KiB
- manifest.yaml517 B
- references/cross-analysis-guide.md11.7 KiB
- references/cwt-guide.md22.3 KiB
- references/method-selection-guide.md6.2 KiB
- references/multiresolution-guide.md17.9 KiB
- references/reassignment-guide.md11.8 KiB
- references/stft-guide.md16.4 KiB
- scripts/assessBoundary.m3.1 KiB
- scripts/assessSignalForTF.m4.8 KiB
- scripts/assessSpectralEnergy.m3.4 KiB
- scripts/boundaryExDisjointSine.mat(opens on GitHub)Not mirrored: opens on GitHub7.6 KiB
- scripts/illustrateBoundary.m902 B
- scripts/illustrateTransientLocalization.m1.3 KiB
- scripts/plotAntiAnalyticScalogram.m831 B
references/reassignment-guide.md
Time-Frequency Reassignment Guide
Overview
Reassignment techniques sharpen time-frequency representations by moving energy from each analysis bin to a more precise location. Two fundamentally different approaches exist:
Full reassignment (time + frequency) — produces the sharpest visual picture but is not invertible. Energy is displaced in both axes, destroying the structure needed for reconstruction.
Synchrosqueezing (frequency only) — reassigns energy only along the frequency axis toward instantaneous frequency. Because the time axis is untouched, the transform remains invertible — individual oscillatory modes can be extracted and reconstructed.
Choose full reassignment for visualization and detection. Choose synchrosqueezing when you need to extract and reconstruct individual signal components.
Function Landscape
| Function | Domain | Type | Invertible | Toolbox |
|---|---|---|---|---|
fsst | STFT | Synchrosqueezing | Yes (ifsst) — machine precision | Signal Processing |
wsst | CWT | Synchrosqueezing | Yes (iwsst) — approximate (Morlet formula) | Wavelet |
spectrogram(..., "reassigned") | STFT | Full reassignment | No | Signal Processing |
pspectrum(..., Reassigned=true) | STFT | Full reassignment | No | Signal Processing |
No reassignment option exists for:
stft/istft— usefsstinstead for STFT-domain synchrosqueezingcwt— usewsstinstead for CWT-domain synchrosqueezing
When to Use
Visualization only (sharpest picture):
spectrogram("reassigned")orpspectrum(Reassigned=true)Mode extraction + reconstruction (STFT domain):
fsst→tfridge→ifsstMode extraction + reconstruction (CWT domain):
wsst→wsstridge→iwsst
Full Reassignment: spectrogram / pspectrum
Full reassignment displaces each STFT coefficient to the local centroid of the Wigner-Ville distribution — both in time (group delay) and frequency (instantaneous frequency). The result is maximally concentrated but non-invertible.
spectrogram (reassigned)
[s, f, t] = spectrogram(x, window, noverlap, nfft, fs, "reassigned");Returns reassigned time-frequency matrix directly
Same window/overlap/nfft interface as standard spectrogram
The
"reassigned"flag is a trailing positional argument
pspectrum (reassigned)
[p, f, t] = pspectrum(x, fs, "spectrogram", Reassigned=true);Name-value syntax:
Reassigned=trueBuilt-in resolution/leakage controls via
FrequencyResolution,LeakageOutput is power spectrum (not complex STFT coefficients)
Limitations
Not invertible — cannot reconstruct individual signal components
Ridge extraction still works — use
tfridgeon the reassigned matrix for instantaneous frequency estimation, but you cannot invert back to time domain from the reassigned representation aloneUseful for detection, classification, and visualization — not for signal separation
STFT Synchrosqueezing: fsst / ifsst
Forward Transform
[sst, f, t] = fsst(x, fs); % default: Kaiser(256, beta=10)
[sst, f, t] = fsst(x, fs, window); % custom window
fsst(x, fs); % no outputs → auto-plotKey constraints:
Overlap is always
window_length - 1(hop = 1 sample) — not configurablenfft = window_length— DFT length equals window lengthReal input → one-sided spectrum; complex input → two-sided centered spectrum
Inverse Transform
xrec = ifsst(sst); % full reconstruction
xrec = ifsst(sst, window, f, [flo fhi]); % frequency-range reconstruction
xrec = ifsst(sst, window, iridge); % mode extraction via ridge
xrec = ifsst(sst, [], iridge, NumFrequencyBins=4); % control bandwidth around ridgeFull reconstruction is machine-precision (~1e-14 error)
Window must match the forward
fsstcallRidge-based extraction: pass
iridgefromtfridge
Ridge Extraction with tfridge
[fridge, iridge] = tfridge(sst, f, penalty);
[fridge, iridge] = tfridge(sst, f, penalty, NumRidges=2);tfridgeis generic — works on any TF matrix (fsst, spectrogram, wsst, etc.)Default penalty = 0 (no smoothing)
CWT Synchrosqueezing: wsst / iwsst
Forward Transform
[sst, f] = wsst(x, fs); % default: amor wavelet, VoicesPerOctave=32
[sst, f] = wsst(x, fs, 'bump'); % specify wavelet
[sst, f, fbparam] = wsst(x, fs, 'bump', VoicesPerOctave=32);
wsst(x, fs); % no outputs → auto-plotKey details:
Only accepts real-valued signals
Default wavelet is
"amor"(not Morse likecwt)VoicesPerOctave must be even, range 10–48, default 32
Subtracts the signal mean before analysis internally
Supports
Boundary:"periodic"(default),"reflection","zeropad"
Inverse Transform
xrec = iwsst(sst); % full reconstruction (approximate)
xrec = iwsst(sst, 'bump'); % specify wavelet (must match forward)
xrec = iwsst(sst, iridge); % mode extraction
xrec = iwsst(sst, iridge, NumFrequencyBins=16); % control bandwidth
xrec = iwsst(sst, f, [flo fhi]); % frequency-range reconstructionReconstruction is approximate — uses Morlet single-integral formula (
2/Rpsi * real(sum(sst,1)))Wavelet must match between
wsstandiwsstDefault NumFrequencyBins = 16 (half of default VoicesPerOctave=32)
wsstsubtracts the mean butiwsstdoes NOT add it back — user must addmean(x)if needed
Ridge Extraction with wsstridge
[fridge, iridge] = wsstridge(sst, penalty, f, NumRidges=2);wsstridgeiswsst-specific — handles filter bank parameters and log-spaced frequencyPenalty is the 2nd positional argument (before
f)Calls the same underlying engine as
tfridge:signalwavelet.internal.tfridge.extractRidges
Penalty Term for Ridge Extraction
Why It's Needed
Without a penalty, the ridge extraction is purely greedy — it picks the bin with maximum energy at each time step. When a component's amplitude dips below competing energy (noise, another mode), the ridge jumps to the wrong frequency.
When to Use
Multiple ridges (
NumRidges > 1) — almost always needed to prevent cross-assignment between modesSingle modulated component in noise — prevents jumping to noise peaks during amplitude dips
FM signals — prevents short-cutting across rapid frequency excursions
How It Works
The penalty adds cost penalty × (distance_in_bins)² for changing frequency between adjacent time steps. This trades energy-maximization against trajectory smoothness.
The penalty operates in bins, not Hz. For wsst (log-spaced bins), the physical frequency change per bin varies with frequency. For fsst (linear bins), it's uniform.
Value Selection
No automatic method exists. Start with penalty = 5 and adjust:
Too low → ridge still jumps between modes
Too high → over-smooths, can't track legitimate rapid frequency changes (FM content)
Synchrosqueezing Can Rescue CWT's Constant-Q Limitation
CWT's constant-Q property means bandwidth grows with frequency — closely-spaced high-frequency tones get smeared together. wsst can partially rescue this by concentrating the smeared energy back toward the true instantaneous frequencies.
% DTMF tones: CWT smears high-freq group, wsst sharpens them
[sst, f] = wsst(tones, Fs, 'bump');Decision hierarchy:
Tones well-separated relative to bandwidth → raw
cwtworksTones moderately close →
wsstsharpens enough to resolveTones within 2Δ of each other → synchrosqueezing also fails → use
stft/fsst
Resolvability Condition
For synchrosqueezing (both fsst and wsst) to resolve two modes:
|φ₁'(t) - φ₂'(t)| > 2Δ
where:
φ'(t)= instantaneous frequency of each modeΔ= bandwidth of the analysis wavelet/window at that frequency
Implications:
Parallel chirps with constant separation: resolvable if separation > 2Δ everywhere
Crossing chirps: always unresolvable at the crossing point (IF difference = 0)
For CWT/wsst (constant-Q): Δ grows with frequency → harder to resolve at high frequencies
For STFT/fsst: Δ is fixed by window → uniform resolving ability
Precision Sensitivity
The synchrosqueezing algorithm reassigns energy to the nearest frequency bin based on estimated instantaneous frequency. In single precision, rounding at bin boundaries causes off-by-one differences in reassignment.
Affected scenarios:
Code generation (C/C++ via MATLAB Coder) — results may differ from MATLAB
GPU arrays (Parallel Computing Toolbox) — floating-point order-of-operations differs from CPU
Recommendation: Use double-precision data with fsst/wsst when:
Comparing results across MATLAB, codegen, and GPU
Ridge extraction must be reproducible
Mode reconstruction fidelity matters
Complete Workflow: Mode Extraction
STFT-based (fsst)
% 1. Compute synchrosqueezed STFT
[sst, f, t] = fsst(x, fs, kaiser(256, 10));
% 2. Extract ridges with penalty
[fridge, iridge] = tfridge(sst, f, 5, NumRidges=2);
% 3. Reconstruct individual modes
xmode1 = ifsst(sst, kaiser(256, 10), iridge(:,1));
xmode2 = ifsst(sst, kaiser(256, 10), iridge(:,2));CWT-based (wsst)
% 1. Compute synchrosqueezed CWT
[sst, f] = wsst(x, fs, 'bump');
% 2. Extract ridges with penalty
[fridge, iridge] = wsstridge(sst, 5, f, NumRidges=2);
% 3. Reconstruct individual modes
xrec = iwsst(sst, iridge);
xmode1 = xrec(:,1);
xmode2 = xrec(:,2);Common Mistakes
| Mistake | Why It's Wrong | Correct Approach |
|---|---|---|
Using stft and expecting reassignment | stft has no reassignment option | Use fsst for invertible synchrosqueezing, or spectrogram("reassigned") for visualization |
Omitting penalty with NumRidges > 1 | Ridges jump between modes at energy crossings | Always use penalty ≥ 1 when extracting multiple ridges |
Expecting iwsst to give exact reconstruction | iwsst uses Morlet single-integral (approximate) | Accept the approximation, or use fsst/ifsst for machine-precision reconstruction |
Forgetting to add back the mean after iwsst | wsst internally subtracts mean(x) but iwsst doesn't restore it | Add mean(x) to the reconstruction if DC level matters |
Using single precision with fsst/wsst | Off-by-one bin reassignment differences vs double | Use double precision for reproducible results across MATLAB/codegen/GPU |
| Expecting synchrosqueezing to resolve modes within 2Δ | Resolvability condition requires IF separation > 2× bandwidth | If modes are too close, switch to STFT with narrow window |
Using wsstridge(sst, f, penalty, ...) | Penalty is the 2nd argument for wsstridge, before f | wsstridge(sst, penalty, f, NumRidges=n) |
Using tfridge(tfm, f) without penalty for FM signals | FM components have time-varying frequency — greedy search jumps | Add penalty: tfridge(tfm, f, penalty) |
Documentation References
| Topic | Link |
|---|---|
fsst reference | https://www.mathworks.com/help/signal/ref/fsst.html |
ifsst reference | https://www.mathworks.com/help/signal/ref/ifsst.html |
tfridge reference | https://www.mathworks.com/help/signal/ref/tfridge.html |
wsst reference | https://www.mathworks.com/help/wavelet/ref/wsst.html |
iwsst reference | https://www.mathworks.com/help/wavelet/ref/iwsst.html |
wsstridge reference | https://www.mathworks.com/help/wavelet/ref/wsstridge.html |
| Time-frequency reassignment and mode extraction | https://www.mathworks.com/help/wavelet/ug/time-frequency-reassignment-and-mode-extraction-with-synchrosqueezing.html |
Copyright 2026 The MathWorks, Inc.
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