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Matlab Register Point Clouds

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From the author

Register 3-D point clouds using ICP, NDT, LOAM, FGR, phase correlation, and CPD algorithms. Use when registering or aligning 3-D point clouds, choosing a registration algorithm, tuning registration parameters, preprocessing point clouds for registration or combining point clouds after registration.
— the description by MathWorks

AutoGineer summary

Written by AutoGineer from the skill’s own files, not by the author

This skill provides a comprehensive framework for aligning 3-D point clouds using MATLAB's Computer Vision and Lidar Toolboxes. It covers a wide range of registration algorithms including ICP, NDT, LOAM, FGR, and CPD, offering guidance on algorithm selection based on data characteristics, preprocessing techniques like downsampling and filtering, and methods for combining registered scans into maps.

What it does

  • Provides a selection guide for local, global, and ground-data registration algorithms.
  • Details preprocessing steps such as cylindrical filtering and grid-based downsampling.
  • Offers patterns for incremental map building and combining multiple point clouds.
  • Explains parameter tuning strategies to optimize registration accuracy and speed.
  • Includes instructions for using the Point Cloud Registration Analyzer app for interactive tuning.
  • Outlines best practices for handling organized vs. unorganized point cloud data.

When to use it

  • When you need to align multiple 3-D lidar scans or point cloud datasets.
  • When you are building a 3-D map from a sequence of point cloud frames.
  • When you need to choose the most appropriate registration algorithm for your specific data.
  • When you need to preprocess raw point cloud data to improve registration performance.
  • When you want to interactively compare and tune registration parameters.

Advantages

  • Covers a broad spectrum of registration techniques from simple ICP to advanced LOAM.
  • Provides clear, actionable patterns for common lidar processing workflows.
  • Includes specific guidance on parameter tuning to minimize RMSE.
  • Offers robust strategies for both local refinement and global alignment.

Usage examples

“How do I perform a basic ICP registration on two point clouds?”
The agent provides a code snippet using pcregistericp with the plane-to-plane metric and demonstrates how to visualize the result with pcshowpair.
“What is the recommended way to build a map from a sequence of lidar scans?”
The agent provides a workflow using a loop to load scans, apply cylindrical filtering and downsampling, perform pairwise registration, and finally combine them using pcalign.
“How can I improve the registration accuracy of my point clouds?”
The agent suggests preprocessing steps like downsampling with pcdownsample, filtering noise with findPointsInCylinder, and tuning parameters like gridStep or InlierRatio.
“Which algorithm should I use if my point clouds are significantly misaligned?”
The agent recommends global registration approaches like FGR or CPD (rigid/nonrigid) to align the clouds before refining with a local method like ICP.

Install

  1. Download the skill as a ZIP:

    https://mp-staging.autogineer.com/agent-skills/matlab/matlab-register-point-clouds/download
  2. Unzip it into the cross-client skills folder of your project:

    mkdir -p .agents/skills && unzip matlab-register-point-clouds.zip -d .agents/skills

Documentation by MathWorks

Point Cloud Registration

Select pcregistericp with Metric="planeToPlane" as the starting point, evaluate algorithm accuracy using RMSE, and align the point clouds using pcalign.

When to Use

  • User asks to register, align or match 3-D point clouds represented as pointCloud objects

  • User needs to choose or tune a registration algorithm

  • User wants to build a map from multiple lidar scans

  • User wants to combine or merge registered point clouds

  • User asks about initial transformation estimation for registration

  • User asks to preprocess point clouds before registration

When NOT to Use

  • User wants to register 2-D point clouds (use matchScans, matchScansGrid, or matchScansLine)

  • User wants image registration (use imregtform or imregcorr from Image Processing Toolbox)

Required Toolboxes

  • Computer Vision Toolbox

  • Lidar Toolbox

Legacy Patterns to Avoid

Do NOT useUse insteadWhy
rigid3d for InitialTransformrigidtform3drigidtform3d uses the premultiply transformation convention, which is more commonly used.

Algorithm Selection Guide

Local Registration

If you have an initial transformation or the point clouds are only slightly misaligned, try these local registration methods in this order. Use the RMSE output as the accuracy metric to minimize.

AlgorithmFunctionNotes
Generalized ICP (plane-to-plane)pcregistericp with Metric="planeToPlane"Default starting point. Additionally, try "planeToPlaneWithColor" if the point cloud has color.
ICP (point-to-plane)pcregistericp with Metric="pointToPlane"Additionally, try "pointToPlaneWithColor" if the point cloud has color.
ICP (point-to-point)pcregistericp with Metric="pointToPoint"Simplest metric. Try if plane-based metrics are inaccurate.
LOAMpcregisterloamRequires organized point clouds. If the point cloud is not organized, but you have the lidar parameters available, use pcorganize to organize the point cloud. Use detectLOAMFeatures first to tune feature detection. It gives you more flexibility on the accuracy vs speed tradeoff since detectLOAMFeatures has parameters to control the number of features.
NDTpcregisterndtTune the gridStep parameter for the scale of the scene.
Ground Data Registration

If you don't have an initial transformation, but you know that the data corresponds to ground data, try phase correlation.

AlgorithmFunctionNotes
Phase CorrelationpcregistercorrSpecifically designed for ground data. Not a local registration method.
Global Registration

If there is no initial transformation and the point clouds are significantly misaligned (overlap less than 50%), first use a global registration approach to align the moving point cloud to the fixed point cloud, then optionally use a local registration method as a refinement step to improve accuracy. Note that global registration approaches are usually slower than local ones.

AlgorithmFunctionNotes
FGRpcregisterfgrFeature-based approach.
CPD (rigid)pcregistercpd with Transform="Rigid"Probabilistic framework. It handles outliers well. Use for small point clouds.
CPD (nonrigid)pcregistercpd with Transform="Nonrigid"Only option for non-rigid/deformable registration.
FPFH feature matchingextractFPFHFeatures + pcmatchfeatures + estgeotform3dExtract FPFH descriptors, match features, and estimate the transformation using the MSAC algorithm (a variant of RANSAC). Tune NumNeighbors in extractFPFHFeatures and gridStep in pcdownsample to ensure enough features and feature matches.
General Guidelines
  • The initial transformation is the transformation that aligns the moving point cloud to the fixed point cloud. It is important to set the InitialTransform name-value argument for local registration algorithms when an estimate is available. If registering a sequence of point clouds and no other estimate is available, assume constant speed and set the initial transformation to the transformation estimated between the previous pair of point clouds.

  • The RMSE output of pcregisterfgr is not comparable to the RMSE output of the other registration functions because it is the root mean squared error between only inlier points. Use the Point Cloud Registration Analyzer app for comparable RMSE values between all registration approaches.

  • When comparing registration algorithms, check if the point clouds are organized (i.e., ndims(ptCloud.Location) == 3). If they are organized, include LOAM in the comparison. If they are not organized, but lidar parameters are available (e.g., from the sensor metadata or the user), use pcorganize to organize the point clouds and include LOAM in the comparison. Exclude LOAM when the point clouds are unorganized and no lidar parameters are available.

  • When registering a sequence of organized point clouds with LOAM, use pcmaploam to refine the transformations and improve map accuracy in addition to pairwise pcregisterloam registration.

  • Use pcshowpair to visualize the alignment between a pair of registered point clouds.

Preprocessing Steps
  • When using select to filter points from an organized point cloud, always set OutputSize="full" to preserve the organized structure.

  • To improve the speed and accuracy of the registration, use findPointsInCylinder as a cylindrical filter to remove artifacts from the ego vehicle and noise from distant points. Only use findPointsInCylinder for point clouds from spinning lidar sensors.

  • Downsampling can speed up registration and improve accuracy by removing the effects of noisy points. Use pcdownsample to downsample the point clouds before registration. The recommended approach for registration is the gridAverage or the gridNearest methods. gridAverage is faster and gridNearest returns more accurate color, normal, and intensity values if available in the point cloud.

  • Ground removal is not recommended since it can introduce misalignment in the XY plane. In some scenarios it helps speed up registration and improve accuracy, but first evaluate registration results without ground removal. Then, use either segmentGroundSMRF for more accurate ground removal or pcfitplane to get a faster approximation of the ground points.

Parameter Tuning

When tuning parameters, try a range of values between the typical values listed below (choose a step so that it does not exceed 10 values to try). Then, narrow it down further by trying values closer to the best result from that round. The best result corresponds to the lowest RMSE.

Preprocessing Functions
FunctionParameterTypical RangeTuning Strategy
findPointsInCylinderradius(2) (max radius)90%–100% of point cloud extentCompute extent as max(abs([ptCloud.XLimits, ptCloud.YLimits])). Try without findPointsInCylinder too.
findPointsInCylinderradius(1) (min radius)0–10Must be less than radius(2). Keep small until it fully removes the ego vehicle.
pcdownsamplegridStep0.01–1.0
Registration Functions
FunctionParameterTypical RangeTuning Strategy
pcregistericpMetricAll metric valuesTry each metric.
pcregistericpInlierRatio0.5–1.0 (default: 1)
pcregisterndtgridStep0.01–1.5
pcregisterndtOutlierRatio0.1–1.0 (default: 0.55)
pcregisterloam / LOAMPoints / downsampleLessPlanargridStep0.1–2.0
pcregisterloam / detectLOAMFeaturesNumRegionsPerLaser4-15 (default: 6)Try increasing to extract more features. The value must be an integer.
pcregisterloam / detectLOAMFeaturesMaxSharpEdgePoints, MaxPlanarSurfacePointsAbove defaults of 1Try increasing to extract more features. The value must be an integer.
pcmaploamvoxelSize0.1–2.0
pcmaploam / findPoseSearchRadius2–5 (default: 3)
pcregisterfgrgridSize0.01–1.5
pcregistercpdOutlierRatio0.1–0.9 (default: 0.1)
pcregistercorrgridSize50–250
pcregistercorrgridStep0.01–1.5
pcmatchfeaturesMatchThreshold0.01–1.0 (default: 0.01)Increase to allow more matches.
pcmatchfeaturesRejectRatio0.9–0.99 (default: 0.95)Increase if getting 0 matches.
estgeotform3dMaxDistance0.1–5.0 (default: 1.0)Decrease for stricter inlier filtering.
Combining Point Clouds
  • If you found transformations that align a sequence of point clouds, use pcalign to combine them efficiently. pcalign applies a grid filter across the resulting point cloud to eliminate duplicate points, producing a uniformly dense point cloud.

  • If you are combining point clouds that were already transformed using pctransform and you need to preserve every point without any downsampling, use pccat. pccat is the fastest approach since it only concatenates points, but results in a larger point cloud with potential duplicates that can affect the speed and accuracy of downstream workflows.

  • If you are combining just 2 point clouds at a time that were already transformed using pctransform and you want to downsample only the region of overlap to remove duplicate points, use pcmerge. Note that the density of the resulting point cloud may not be uniform since downsampling is only applied to the overlap area. pcalign is recommended over pcmerge because it is faster, supports more than 2 point clouds, produces uniform density, and performs the alignment of the point clouds using the transformation from registration.

Interactive Comparison

Use the Point Cloud Registration Analyzer app to visually compare algorithms, tune parameters, and analyze results interactively:

pointCloudRegistrationAnalyzer

The app supports ICP, NDT, LOAM, FGR, Phase Correlation, and CPD. It provides preprocessing (ROI, downsample, ground removal), side-by-side comparison, and it exports the results to the workspace. It supports registration of a pair of point clouds and currently, it does not support the planeToPlaneWithColor and pointToPlaneWithColor metrics of ICP.

Patterns

Basic Registration
fixedPtCloud = pcread("scan1.pcd");
movingPtCloud = pcread("scan2.pcd");

[tform,movingReg,rmse] = pcregistericp(movingPtCloud,fixedPtCloud,Metric="planeToPlane");
pcshowpair(movingReg,fixedPtCloud)
Preprocessing: Cylindrical Filter and Downsample
radius = [4 100];
idx = findPointsInCylinder(ptCloud,radius);
ptCloudFiltered = select(ptCloud,idx,OutputSize="full");
gridStep = 0.1;
ptCloudDownsampled = pcdownsample(ptCloudFiltered,"gridAverage",gridStep);
Registration with Preprocessing
fixedPtCloud = pcread("scan1.pcd");
movingPtCloud = pcread("scan2.pcd");

% Preprocess
radius = [4 100];
gridStep = 0.1;
fixedIdx = findPointsInCylinder(fixedPtCloud,radius);
fixedFiltered = select(fixedPtCloud,fixedIdx,OutputSize="full");
fixedDownsampled = pcdownsample(fixedFiltered,"gridAverage",gridStep);
movingIdx = findPointsInCylinder(movingPtCloud,radius);
movingFiltered = select(movingPtCloud,movingIdx,OutputSize="full");
movingDownsampled = pcdownsample(movingFiltered,"gridAverage",gridStep);

% Register
[tform,movingReg,rmse] = pcregistericp(movingDownsampled,fixedDownsampled,Metric="planeToPlane");
pcshowpair(movingReg,fixedDownsampled)
Global-to-Local Refinement with FGR and ICP
gridSize = 0.5;
tformGlobal = pcregisterfgr(movingPtCloud,fixedPtCloud,gridSize);

alignedPtCloudGlobal = pctransform(movingPtCloud,tformGlobal);

[tform,movingReg,rmse] = pcregistericp(alignedPtCloudGlobal,fixedPtCloud, ...
    Metric="planeToPlane");

pcshowpair(movingReg,fixedPtCloud)
NDT Registration
fixedPtCloud = pcread("scan1.pcd");
movingPtCloud = pcread("scan2.pcd");

gridStep = 0.5;
[tform,movingReg,rmse] = pcregisterndt(movingPtCloud,fixedPtCloud,gridStep);
pcshowpair(movingReg,fixedPtCloud)
LOAM with Feature Detection
movingFeatures = detectLOAMFeatures(movingOrganized);
fixedFeatures = detectLOAMFeatures(fixedOrganized);

gridStep = 1;
movingFeatures = downsampleLessPlanar(movingFeatures,gridStep);
fixedFeatures = downsampleLessPlanar(fixedFeatures,gridStep);

[tform,rmse] = pcregisterloam(movingFeatures,fixedFeatures);
alignedMovingOrganized = pctransform(movingOrganized,tform);

pcshowpair(alignedMovingOrganized,fixedOrganized)
Phase Correlation for Ground Data
fixedPtCloud = pcread("scan1.pcd");
movingPtCloud = pcread("scan2.pcd");

% Align ground planes to the X-Y plane
maxDistance = 0.4;
referenceVector = [0 0 1];
groundFixed = pcfitplane(fixedPtCloud,maxDistance,referenceVector);
groundMoving = pcfitplane(movingPtCloud,maxDistance,referenceVector);
tformFixed = normalRotation(groundFixed,referenceVector);
tformMoving = normalRotation(groundMoving,referenceVector);
fixedCorrected = pctransform(fixedPtCloud,tformFixed);
movingCorrected = pctransform(movingPtCloud,tformMoving);

% Register using phase correlation
gridSize = 100;
gridStep = 0.5;
[tform,rmse] = pcregistercorr(movingCorrected,fixedCorrected,gridSize,gridStep);

movingReg = pctransform(movingPtCloud,rigidtform3d(tformFixed.A * tformMoving.A * tform.A));
pcshowpair(movingReg,fixedPtCloud)
FPFH Feature-Based Registration
fixedPtCloud = pcread("scan1.pcd");
movingPtCloud = pcread("scan2.pcd");

% Downsample
gridStep = 0.5;
fixedDownsampled = pcdownsample(fixedPtCloud,"gridAverage",gridStep);
movingDownsampled = pcdownsample(movingPtCloud,"gridAverage",gridStep);

% Extract FPFH features
neighbors = 40;
[fixedFeature,fixedValidInds] = extractFPFHFeatures(fixedDownsampled, ...
    NumNeighbors=neighbors);
[movingFeature,movingValidInds] = extractFPFHFeatures(movingDownsampled, ...
    NumNeighbors=neighbors);

fixedValidPtCloud = select(fixedDownsampled,fixedValidInds);
movingValidPtCloud = select(movingDownsampled,movingValidInds);

% Match features
indexPairs = pcmatchfeatures(movingFeature,fixedFeature,movingValidPtCloud, ...
    fixedValidPtCloud,Method="Exhaustive",MatchThreshold=1,RejectRatio=0.99);

matchedFixedPtCloud = select(fixedValidPtCloud,indexPairs(:,2));
matchedMovingPtCloud = select(movingValidPtCloud,indexPairs(:,1));

% Estimate the transformation that aligns the matched pairs
tform = estgeotform3d(matchedMovingPtCloud.Location, ...
    matchedFixedPtCloud.Location,"rigid",MaxDistance=2,MaxNumTrials=3000);

movingReg = pctransform(movingPtCloud,tform);
pcshowpair(movingReg,fixedPtCloud)
Combining Registered Point Clouds
ptCloudArr = [ptCloud1 ptCloud2 ptCloud3 ptCloud4];
tforms = [tform1 tform2 tform3 tform4];
gridStep = 0.01;
ptCloudAligned = pcalign(ptCloudArr,tforms,gridStep);
Incremental Map Building
ptCloudFiles = dir("scans/*.pcd");
numPtClouds = numel(ptCloudFiles);

tforms = repmat(rigidtform3d(),numPtClouds,1);
ptCloudArr = repmat(pointCloud(zeros(0,3)),numPtClouds,1);

% Preprocessing parameters
radius = [4 100];
downsampleGridStep = 0.1;

% Load and preprocess first frame
ptCloud = pcread(fullfile(ptCloudFiles(1).folder,ptCloudFiles(1).name));
idx = findPointsInCylinder(ptCloud,radius);
ptCloudFiltered = select(ptCloud,idx);
ptCloudArr(1) = pcdownsample(ptCloudFiltered,"gridAverage",downsampleGridStep);

initTform = rigidtform3d();

for i = 2:numPtClouds
    % Load and preprocess
    ptCloud = pcread(fullfile(ptCloudFiles(i).folder,ptCloudFiles(i).name));
    idx = findPointsInCylinder(ptCloud,radius);
    ptCloudFiltered = select(ptCloud,idx);
    ptCloudArr(i) = pcdownsample(ptCloudFiltered,"gridAverage",downsampleGridStep);

    [relTform,~,rmse] = pcregistericp(ptCloudArr(i),ptCloudArr(i-1),Metric="planeToPlane",InitialTransform=initTform);
    tforms(i) = rigidtform3d(tforms(i-1).A * relTform.A);

    initTform = relTform;
end

gridStep = 0.01;
ptCloudMap = pcalign(ptCloudArr,tforms,gridStep);
pcviewer(ptCloudMap)
LOAM Map Building
voxelSize = 0.1;
loamMap = pcmaploam(voxelSize);
relPose = rigidtform3d();

gridStep = 1;
ptCloud = ptCloudArr(1);
points = detectLOAMFeatures(ptCloud);
points = downsampleLessPlanar(points,gridStep);
addPoints(loamMap,points,rigidtform3d())

tforms = repmat(rigidtform3d(),numPtClouds,1);

for viewId = 2:numPtClouds
   prevPoints = points;
   ptCloud = ptCloudArr(viewId);
   points = detectLOAMFeatures(ptCloud);
   points = downsampleLessPlanar(points,gridStep);

   relPose = pcregisterloam(points,prevPoints,InitialTransform=relPose);

   [absPose,~,rmseRefinement] = findPose(loamMap,points,relPose);
   addPoints(loamMap,points,absPose);
   tforms(viewId) = absPose;
end

ptCloudMap = pcalign(ptCloudArr,tforms,voxelSize);
pcshow(ptCloudMap)

Copyright 2026 The MathWorks, Inc.


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LICENSE

Copyright 2026 The MathWorks, Inc.
All rights reserved.

Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
3. In all cases, the software is, and all modifications and derivatives of the software shall be, licensed to you solely for use in conjunction with MathWorks products and service offerings.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

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MathWorks
Publisher
MathWorks (Official)
Source
matlab/matlab-agentic-toolkit · skills-catalog/image-processing-and-computer-vision/matlab-register-point-clouds · commit 2a7f215
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BSD 2-Clause License (redistribution allowed)
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