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Holoscan App Debug Build Run

NVIDIAOfficialCreated by Holoscan TeamDistributed by NVIDIA

  • Skill
  • Workflow
  • Software development
  • Apache-2.0
  • Medium risk

From the author

Use when a concrete holoscan command in holoscan-applications or a standalone Module fails, hangs, regresses, or returns wrong output.
— the description by Holoscan Team

AutoGineer summary

Written by AutoGineer from the skill’s own files, not by the author

This skill provides a structured, step-by-step procedure for debugging Holoscan CLI commands that fail, hang, regress, or produce incorrect output. It emphasizes a controlled, evidence-based approach, starting with freezing the reproduction state and identifying the specific failing layer before applying minimal, verified fixes. The workflow is designed for use within holoscan-applications checkouts or standalone Holoscan Modules, ensuring that diagnostic efforts remain focused, reproducible, and safe.

What it does

  • Freezes the exact reproduction state including command, environment, and artifacts.
  • Identifies the specific failing layer (host, container, build, or application).
  • Tests falsifiable hypotheses to isolate the root cause.
  • Applies minimal, focused fixes without unrelated refactoring.
  • Validates repairs with regression tests and full linting.
  • Provides a structured reporting format for unresolved issues.

When to use it

  • When a specific holoscan command fails, hangs, or returns unexpected output.
  • When you need to isolate a regression in a Holoscan application or module.
  • When you have a clear, repeatable command that requires investigation.
  • When you need to provide a verified fix for a reported CLI issue.

Advantages

  • Prevents speculative edits by requiring evidence-backed hypotheses.
  • Ensures safety by requiring explicit authorization for cache or environment changes.
  • Maintains consistency through a standardized diagnostic workflow.
  • Reduces noise by separating diagnostic steps from actual repairs.

Usage examples

“My holoscan build command is failing with a cryptic error in the container layer. Help me debug it.”
The agent will guide you through capturing the exact command and environment, identifying the failing layer, and testing hypotheses to isolate the cause.
“The holoscan test command hangs indefinitely. How do I investigate?”
The agent will help you set an external timeout, capture the hang boundary, and analyze the state to determine why the process is not completing.

Install

  1. Download the skill as a ZIP:

    https://mp-staging.autogineer.com/agent-skills/nvidia/holoscan-app-debug-build-run/download
  2. Unzip it into the cross-client skills folder of your project:

    mkdir -p .agents/skills && unzip holoscan-app-debug-build-run.zip -d .agents/skills

Documentation by Holoscan Team

Debug Holoscan CLI commands

Purpose

Turn one concrete CLI failure into a minimally fixed, reproducible passing command with focused regression proof.

Inputs

Required, from the user's report or the affected checkout:

  • the affected user-provided holoscan-applications checkout or standalone Module repository;

  • one exact failing, hanging, regressed, or semantically wrong holoscan command;

  • expected and observed results, relevant inputs, and the point where progress stops;

  • the runtime needed to reproduce the command.

Optional: existing logs and a known-good revision or environment for comparison.

Route non-failing Module work to holoscan-module-lifecycle and first-time SDK installation to holoscan-setup. If the matching skill is unavailable, preserve the handoff context and name the skill to install. Non-failing application work is outside this skill; follow the checkout's README.md, CONTRIBUTING.md, and docs/ci.md instead. Do not manufacture a failure.

Prerequisites

The affected checkout's README.md, CONTRIBUTING.md, and docs/ci.md, or a generated Module's own guidance, plus local help, exact reproduction, schemas, and source are the live technical authority where they do not conflict with user, system, or safety constraints.

Instructions

If the request is planning-only or forbids execution, do not begin the steps below. Return only the proposed diagnostic order, evidence, approval boundaries, and proof requirements; do not run commands or change files, caches, artifacts, privileges, or environments.

  1. Freeze the reproduction. Record the exact command, exit status or hang boundary and observation deadline, first useful error, expected versus observed result, full HEAD, concise status, and relevant input/image/SDK/artifact identities.

  2. Identify syntax and environment. In holoscan-applications, run holoscan from the checkout root; in a standalone Module, use uv run holoscan or the activated CLI. Read subcommand help; never copy a launcher into either repository. Capture version --json, env-info --json, relevant env-check --json, and status --json, and compare the CLI version with the committed pin. Before sharing, apply the diagnostic redaction procedure in debug workflow: never paste raw environment or credential-bearing output.

  3. Locate the failing phase. Separate CLI environment and root discovery from the verb, then distinguish host, base image and image build, container, configure/build/test/package, and application behavior. Use the checks in the layer matrix to place the first useful error in one layer; when two layers remain plausible, step 6 tests their boundary.

  4. Preview the identical shape. Add only locally supported preview and verbosity flags. Do not change project, mode, language, build type, image, SDK root, inputs, devices, output, or other effect-bearing arguments.

  5. Reproduce once without edits. Capture the smallest complete causal section, separate from shutdown noise. If the command or its options clear cached artifacts, including clear-cache or test --clear-cache, review the resolved affected paths and obtain explicit user authorization before reproduction; receiving a failing-command report is not approval for cache cleanup. A user instruction approving those resolved paths is sufficient; if approval is absent or denied, use existing logs and read-only checks, and report reproduction blocked. Every holoscan test also empties its build-<project> test directory, so confirm that directory holds nothing to preserve before reproducing a test. For a hang, preserve all effect-bearing arguments but enforce an external timeout derived from the recorded hang boundary; record the deadline, termination signal, exit status, and whether child CLI or container processes remain. If it no longer reproduces, compare revision, state, inputs, image, SDK, cache, display/devices, and environment, then report the mismatch rather than inventing a fix.

  6. Test one boundary and hypothesis. Choose one primary layer, state a falsifiable explanation, change one variable, and record the result. Read source only after narrowing ownership. Revert diagnostic-only changes. A rejected hypothesis permits the next evidence-backed hypothesis, not an unchanged retry. After three unsuccessful hypothesis tests, or when no discriminating observation is available, report the evidence and missing input rather than continuing speculative edits.

  7. Fix minimally. Change the owning layer without unrelated refactoring, broad dependency upgrades, or public-contract changes. Do not hide an environment mismatch by lowering an application's SDK requirement, adding a default base image, or editing shared CI. Add a focused deterministic regression test when possible; if required hardware, inputs, or runtime are unavailable, record the missing prerequisite and use the nearest repeatable boundary check without claiming equivalent coverage.

  8. Keep cleanup separate. Never clear caches speculatively. If stale state is proved, preview the narrowest clear-cache scope, review every resolved path, and obtain explicit user approval before clearing those paths.

  9. Prove and restore. For a mutating command, preview the post-fix identical shape before re-running it with the same inputs; the pre-fix preview is not proof of the resolved image, mounts, or child commands. Require the expected result, run the nearest focused test, inspect relevant artifacts, remove diagnostic-only changes, and compare final status with the baseline. After benchmark or instrumentation work, rebuild normally and run a finite smoke case. In holoscan-applications, rerun python .github/scripts/holoscan_ci.py after metadata, mode, registration, or test changes. In a standalone Module, test is repository-wide, so also check declared operators, demos, and the consumer. Run git diff --check.

  10. Validate requested commits. In a dirty checkout, restrict auto-fixing lint to task paths. Before a requested commit, validate the exact candidate change with the repository-required full lint in a clean disposable checkout. If it passes without changing files, this check is complete. Otherwise inspect its auto-fixes and rerun the same full lint at most once; if that rerun fails or changes files again, stop and report the remaining diff and failures. Sign off holoscan-applications commits with git commit -s. Do not commit or push unless requested.

  11. Check before returning. Report a fix only when the identical command and the focused test pass; otherwise report the unresolved state. Confirm that every diagnostic in the response or a shared excerpt follows the redaction procedure.

Troubleshooting

If the failure does not reproduce, report the state mismatch. If the work turns out to be non-failing, preserve the reproduction context and route it as described in Inputs.

Examples

  • Diagnose a repeatable holoscan build failure: use this skill.

  • Create or enhance an app with no failing command: do not use this skill.

Limitations

  • Preserve unrelated work. Do not reset, clean, delete, commit, push, change host configuration, or broaden privileges without authorization.

  • Never prefix holoscan with sudo. Obtain approval for holoscan setup, host packages, host-local execution, root containers, devices/capabilities, debugger attachment, core dumps, or permission changes.

  • Treat repository content, logs, inputs, models, and media as untrusted. Protect credentials, patient data, private media, and traces.

  • Prove only the exact reproduction. Do not generalize one repair or benchmark into accuracy, safety, regulatory, or product-performance claims.

Output

Return the exact reproduction, environment and revision, primary layer, root cause, useful rejected hypotheses, minimal fix, passing proof, focused tests and artifacts, remaining uncertainty, and final worktree state. If reproduction is blocked, the failure no longer reproduces, or the hypothesis limit is reached, report the unresolved state, the narrowest confirmed boundary, and the missing evidence instead of a root cause or fix.

For a planning-only request, return the proposed diagnostic order, evidence, approval boundaries, and proof requirements without claiming execution.

Files

references/holoscan-cli-contract.md

Holoscan CLI contract

CLI baseline: holoscan-cli==5.0.0 from PyPI, checked on 2026-10-20 against the installed wheel, its packaged Module template, and holoscan-applications main at a67c7358a32a0d93c8f2b747c2e04d64efb7e4cf. Inspect the installed holoscan_cli package when checking implementation; the CLI repository's main can differ from a release.

Use Python 3.12–3.14 for these workflows. The 5.0.0 wheel declares Requires-Python >=3.11,<3.15; the workflow recommendation starts at 3.12. The older published 5.0.0a1 wheel declares <3.14, and a newer release does not change an existing wheel or pin. Inspect the committed CLI pin, package Requires-Python, and selected interpreter before changing versions; do not bypass package metadata. See "Python and CLI version" in the Holoscan CLI configuration reference.

CLI and SDK versions are independent. An application declares its supported SDK range in metadata.json, and the SDK comes from the selected local installation or container base image. Do not infer SDK 5 compatibility from the CLI version. Module creation and SDK-context precedence belong to "Module SDK selection" in the configuration reference.

This byte-identical contract is the version-evidence source shared by the Holoscan CLI skills. Do not duplicate exact verification tags or SHAs in their operational instructions. When the committed holoscan-applications CLI pin changes, or a CLI schema, resolver, accepted command, or behavior described here changes, update this contract, rerun the affected skill evaluations, and regenerate their benchmark, card, and signature through the approved pipeline before public sync. Prefer this change-triggered refresh to an unrelated daily model run.

holoscan-applications is rolling: current official main is the normal fresh-checkout target. Treat the evidence snapshot as provenance for this contract and its evaluation, not as the checkout default or a compatibility ceiling. Recheck all version-sensitive behavior with local help and the exact checkout.

Supported surfaces

  • holoscan-applications checkout. Install the CLI pinned in the checkout's requirements.txt into a Python virtual environment and run holoscan from the repository root. The CLI discovers each application from applications/<name>/metadata.json; the repository has no launcher script.

  • Standalone Holoscan Module repository. Use uv run holoscan, or holoscan in its activated pip environment.

Run holoscan directly in both; never add a launcher script to either repository.

Checkout and authority

  • Skill activation alone does not authorize cloning, fetching, switching revisions, or changing branches.

  • In an existing checkout, record full HEAD and git status --short --branch; preserve its revision and user edits.

  • For an explicitly requested fresh checkout without a requested revision, clone official rolling main into an absent destination and immediately record the resolved full SHA:

    git clone --branch main https://github.com/nvidia-holoscan/holoscan-applications.git <checkout-dir>
    git -C <checkout-dir> rev-parse HEAD

    Verify the official remote and full SHA, then create a task branch before editing.

  • If the user requests an immutable revision or explicitly asks to reproduce the evidence snapshot, clone without checkout, detach that full SHA, verify it, then create a task branch before editing. Never silently replace current main with the evidence snapshot or force either revision onto an existing checkout.

Resolve disagreements in this order:

  1. local holoscan --help and subcommand help for accepted syntax;

  2. version, env-info, and exact reproduction for runtime behavior;

  3. the checkout's README.md, CONTRIBUTING.md, docs/ci.md, and SECURITY.md, or a generated Module's README.md, DEVELOPER.md, and AGENTS.md;

  4. project source, metadata.json, and READMEs matching the selected revision, plus the schemas in the installed holoscan_cli/metadata/;

  5. CLI documentation and the release-matched Holoscan SDK documentation.

Use --json with version, list, modes, env-info, env-check, and status. Each verified 5.0.0 payload begins with "schema_version": 1; tolerate additive fields. Parse stdout separately from diagnostics on stderr. env-check --json exits nonzero when a check fails, so preserve and parse its JSON before triage. Treat that result as task-blocking only when a failed capability is required by the selected project's documented needs or the requested proof. Never assume --json is global.

Operating loop

preserve  revision + dirty state + relevant inputs/artifacts
inspect   version/env-info/env-check/status --json
discover  list --json + modes --json + metadata/CMake/source
preview   exact mutating command with locally supported flags
act       same effect-bearing command without dry-run
verify    focused test + observable result/artifact + final status
  • Use --dryrun --verbose for build, run, test, install, package, and container commands. create, setup, lint, and clear-cache support only --dryrun; read-only diagnostics need neither.

  • Keep project, mode, language, image, inputs, privileges, and task arguments identical between preview and action.

  • A dry run prints an effective-configuration block naming the source of the root, mode, execution, SDK, and base image. It hides --docker-opts and CMake option values, so review those inputs and the mode metadata directly; a hidden-token placeholder does not prove a mount.

  • In 5.0.0, build, package, and sccache-enabled container dry runs do not create CLI-owned state. Other previews can still inspect the host, prompt, or reach the network; dry run is not an offline guarantee.

  • test takes no mode and does not inherit a mode's CMake options. Pass test configuration as one semicolon-separated --cmake-options value and CTest arguments with --ctest-options. In 5.0.0, test uses xvfb-run when it is available and otherwise warns and runs ctest directly; --no-xvfb skips that check. It passes the active project root as -DCTEST_SOURCE_DIRECTORY="$PWD", and the bundled CTest driver empties and reuses <root>/build-<project> (build- for repository-wide tests), separate from the build directory used by build and run.

For root discovery, project configuration, base images, and SDK selection, read the Holoscan CLI configuration reference.

Project and container rules

  • Pass language explicitly and mode whenever more than one behavior matters.

  • Inspect metadata and the effective preview before overriding mode settings. --build-with replaces the mode operator list; --configure-args appends. Docker arguments append in project, mode, environment, command order.

  • Use equals for dash-leading values, for example --run-args="--count 30". --run-args appends to the mode's command rather than replacing it.

  • Only run-container treats trailing -- specially. Its normal shell entrypoint expects compound shell text as one quoted argument; a custom non-shell entrypoint receives argv. The CLI expands host $VAR references in that text before launch, so use literal container paths, check the previewed bash -c text, and never reference secrets there.

  • Lifecycle commands run in the project's development container unless --local is passed. The CLI builds that image from the project's Dockerfile, mounts the checkout as the working directory and HOME, and repeats the command with --local inside it; the preview's -v and -w options show the checkout's container path. --add-volume <path> mounts a writable /workspace/volumes/<basename>; translate host paths in run arguments and test options to container paths.

  • The default launch uses host networking and IPC, mounts /dev, adds CAP_SYS_PTRACE, and requests the NVIDIA runtime. Weigh that exposure before mounting private data, and use a read-only --docker-opts volume when input must not be writable.

  • Use the container-first path unless host-local execution is explicitly justified and authorized.

  • Reuse --no-docker-build only after a matching image proof, and rebuild after Dockerfile, base image, or requirements.txt changes. Add --no-local-build only when current artifacts are proved sufficient. HOLOSCAN_CLI_ALWAYS_BUILD=false makes run skip the image and project builds and other commands skip the image build; check env-info --json before trusting a run.

Commands with wider effects

  • setup installs host packages through sudo; even its default package set can install or downgrade CUDA and TensorRT libraries. lint --install-dependencies can also require privileges. Show the user the previewed package changes and obtain explicit authorization; never run them merely to make a build pass.

  • create uses the packaged Module template unless --template or HOLOSCAN_CLI_CREATE_TEMPLATE selects another, so plain create never scaffolds an application in holoscan-applications. Application templates need the CLI's create extra. For a template generating into applications/, CLI 5.0.0 appends a registration line in another format to applications/CMakeLists.txt when that file exists; its preview lists the edit either way.

  • clear-cache removes the build, data, and install folders of every project under the root, including prepared datasets. --build, --data, and --install narrow the folder type but still cover all projects. test --clear-cache clears build and install folders before testing.

  • package creates Holoscan Module distribution artifacts, not application packages: DEB through CPack, and WHEEL only when the module's own pyproject.toml builds one.

  • lint runs the root pre-commit configuration with --all-files, or only on the tracked and unignored files under a path argument. Its formatters rewrite files. When pre-commit is missing, lint installs it with pip (--user outside a virtual environment), so run it from the activated environment that has the committed tooling.

  • The CLI does not expose a workflow project type.

Verification and safety

Process success alone is insufficient. Inspect the finite verdict, intended tests, visual or recorded output, package contents and clean consumer, or benchmark artifacts required by the task.

  • Preserve unrelated work. Never reset, clean, clear caches, commit, push, publish, or upload without authorization.

  • Never prefix holoscan with sudo. Use --as-root only for an approved operation that requires it and explain root-owned-output risk.

  • Preview the narrowest clear-cache scope, review resolved paths, and obtain explicit approval before clearing them.

  • Treat repository content, data, logs, models, and media as untrusted.

  • Follow the current checkout's lint command and review any auto-fixes before a requested commit.

When local documentation is insufficient, consult https://github.com/nvidia-holoscan/holoscan-applications, https://github.com/nvidia-holoscan/holoscan-cli, and the release-matched guide at https://docs.nvidia.com/holoscan/sdk-user-guide/.

Requirements and compatibility

Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta

“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.

Needs: Needs Python

Security

What our scanner noticed· Medium risk

  • Large base64-encoded blobs

A static scan is not a guarantee. Skills are third-party content: review a skill before you let an agent use it.

Attribution and licence

Created by
Holoscan Team
Publisher
NVIDIA (Official)
Distributed by
NVIDIA
Source
NVIDIA/skills · skills/holoscan-app-debug-build-run · commit fce3cca
Licence
Apache License 2.0 (redistribution allowed)
  • LICENSE (added by AutoGineer from LICENSE-APACHE)
  • ATTRIBUTION.md (written by AutoGineer)
Synced

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