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Kermt Setup

NVIDIAOfficialPublished by NVIDIA

  • Skill
  • Workflow
  • Cloud and DevOps
  • Apache-2.0
  • Medium risk
  • Has scripts

From the author

Bootstrap the KERMT agent environment — verify host docker + nvidia-container-toolkit, build the kermt:latest image from the repo's Dockerfile if it doesn't yet exist, and run a GPU smoke test inside the container. Every other kermt-* skill depends on this; invoke it first.
— the description by NVIDIA

AutoGineer summary

Written by AutoGineer from the skill’s own files, not by the author

The kermt-setup skill provides a foundational workflow for initializing the KERMT agent environment. It performs a series of prerequisite checks, including verifying the host's Docker installation and NVIDIA container toolkit, ensuring GPU passthrough is functional, and building the required Docker image from the repository. The process concludes with a GPU smoke test inside the container to confirm that the environment is correctly configured for subsequent KERMT agent tasks.

What it does

  • Verifies host Docker daemon connectivity and installation.
  • Checks for NVIDIA container toolkit and GPU passthrough capability.
  • Builds the kermt:latest Docker image from the local repository.
  • Executes a GPU smoke test using PyTorch within the container.
  • Reports final image details and environment readiness status.

When to use it

  • When setting up the KERMT agent environment for the first time on a new machine.
  • After modifying the Dockerfile or environment configuration files.
  • When troubleshooting environment issues before running other kermt-* skills.
  • When explicitly requested by the user to rebuild the agent environment.

Advantages

  • Ensures all hardware and software dependencies are met before agent execution.
  • Automates the complex setup of GPU-accelerated container environments.
  • Provides clear diagnostic feedback if hardware or container configuration fails.
  • Prevents redundant builds by verifying existing image status.

Usage examples

“Set up the kermt environment.”
The agent verifies Docker, checks GPU passthrough, builds the image if missing, and runs a smoke test to confirm CUDA availability.
“Rebuild the kermt image.”
The agent prompts for confirmation to remove the existing image and then triggers a fresh build process.

Install

  1. Download the skill as a ZIP:

    https://mp-staging.autogineer.com/agent-skills/nvidia/kermt-setup/download
  2. Unzip it into the cross-client skills folder of your project:

    mkdir -p .agents/skills && unzip kermt-setup.zip -d .agents/skills

Documentation by NVIDIA

kermt-setup

Bootstrap the KERMT agent environment. Run this once on a fresh machine (or after the Dockerfile or environment.yml changes) before invoking any other kermt-* skill.

Skill and runtime paths

Set SKILL_DIR to the absolute path of this installed skill directory. Export KERMT_REPO as the absolute path to the KERMT checkout used for model execution. The bundled container helper mounts that checkout at /workspace and this skill at /skill (read-only). Commands inside the container use /skill/scripts/.

Hardware requirements

  • GPU: at least one CUDA-capable NVIDIA GPU visible to the host. The image is based on nvidia/cuda:12.6.3-cudnn-devel-ubuntu22.04, so the host driver must support CUDA 12.6. Verify with host nvidia-smi before invoking.

  • Host docker: docker engine + nvidia-container-toolkit. Without the toolkit, docker run --gpus all will fail at step 2 of the workflow below.

  • Disk: ≈ 50 GB free for the built kermt image (docker image inspect --format '{{.Size}}' reports ≈ 44 GB; the docker images Size column can show ~100 GB because it counts shareable buildx attestation layers that are deduplicated across images). Plan for ~50 GB of unique on-disk storage; add a comfortable buffer if you're also keeping build cache.

  • Memory: the build itself peaks at ~4 GB RAM during conda env solve.

  • This skill does not run training/inference workloads itself; per-workflow hardware requirements (VRAM, GPU count) are declared in the respective kermt-<workflow> skills.

When to invoke

  • User explicitly asks (/kermt-setup, "set up kermt", "build the kermt image", etc.).

  • Or another kermt-* skill detected that the image does not exist and routed here. (Most other skills call kermt_ensure_image themselves, so this is usually only needed for the first-time setup, debugging, or a forced rebuild.)

Inputs

The skill takes no required arguments. Optional overrides (via env vars before invoking, or by setting them in the user's shell):

  • KERMT_IMAGE — image tag to build/verify (default: kermt:latest).

  • KERMT_REPO — host path of the kermt repo checkout (default: auto-derived from the script's location).

If the user has not specified a repo path and the current working directory is not inside a kermt repo clone, ask for the repo path before proceeding.

Workflow

All work goes through the bundled scripts/kermt_container.sh on the host. The script's subcommand dispatch can be invoked directly without sourcing — that is the preferred form for skill use.

Let HELPER="$SKILL_DIR/scripts/kermt_container.sh".

  1. Verify docker is installed and the daemon is reachable.

    "$HELPER" check_docker

    Exit 0 → continue. Non-zero → surface the error to the user (typically "docker not on PATH" or "daemon not reachable"); do not attempt step 2.

  2. Verify GPU passthrough works.

    "$HELPER" check_gpu

    This runs docker run --rm --gpus all nvidia/cuda:12.6.3-base-ubuntu22.04 nvidia-smi and checks the exit status. Non-zero → tell the user to install nvidia-container-toolkit on the host and confirm a CUDA-capable NVIDIA GPU is visible to the host (nvidia-smi on the host should also work). Stop here; without GPU passthrough the kermt image will build but no workflow will run.

  3. Build or verify the kermt image.

    "$HELPER" ensure_image

    If the image already exists, this returns immediately. Otherwise it builds from $KERMT_REPO/Dockerfile. Warn the user before invoking that the first build takes ~10–20 minutes on a typical workstation and streams build logs to the console. Do not run this in the background — the user wants to see progress and any build failures must surface immediately.

  4. GPU smoke test inside the container. Quote the whole python command as a single string — the helper passes args through bash -c "$*", so unquoted multi-word commands get re-parsed and any embedded quotes are collapsed.

    "$HELPER" run -- 'python -c "import torch; print(\"cuda_available:\", torch.cuda.is_available()); print(\"device_count:\", torch.cuda.device_count())"'

    Expected output: cuda_available: True and a positive device_count. If cuda_available is False despite step 2 passing, something is wrong with the container's CUDA wiring — report the full output to the user and stop; do not declare the environment ready.

  5. Summary to user. Report:

    • Image tag and ID (docker image inspect $KERMT_IMAGE --format '{{.Id}}').

    • Image size (docker image inspect $KERMT_IMAGE --format '{{.Size}}').

    • GPU count detected inside the container.

    • "Ready" — the user can now invoke other kermt-* skills.

Hard rules

  • Do not pull or push docker images. The kermt image is built locally only.

  • Do not auto-delete or prune older kermt:* tags without the user's explicit confirmation — the user may be running a finetune or pretrain in another container that depends on a specific tag.

  • Do not modify the host's docker daemon configuration, daemon.json, or user-group membership.

  • Do not modify the Dockerfile or environment.yml as part of this skill. If the build fails because of a Dockerfile issue, surface the error and stop; let the user decide whether to edit.

  • Do not rebuild the image when it already exists (i.e. do not pass a --no-cache or --pull flag to ensure_image) unless the user explicitly asks for a forced rebuild.

Forced rebuild

If the user explicitly asks to rebuild (e.g. after changing the Dockerfile or environment.yml), the cleanest path is to remove the old image first, then rerun ensure_image:

docker image rm $KERMT_IMAGE
"$HELPER" ensure_image

Confirm with the user before running docker image rm.

Files

BENCHMARK.md

Skill Benchmark: kermt-setup

✅ Overall verdict: PASS — Recommended for publication

Publication Recommendation

Recommended for publication based on the completed evaluation evidence in this report.

Evaluation Metadata

  • Skill: kermt-setup

  • Evaluation date: 2026-09-15

  • Evaluator version: 1.5.6

  • Agents: Claude Code (aws/anthropic/bedrock-claude-opus-4-8), Codex (openai/openai/gpt-5.5)

  • Tasks: 4 evaluation tasks (3 positive, 1 negative)

  • Dataset digest: sha256:acc9600691efbd2c4b9356f2ca6f5e3a58ccccbf8772a88bf444c1b00baa43e3 (skill-evaluator-dataset-snapshot/1)

  • Attempts per task: 3

  • Environment: k8s-sandbox

  • Tier 2 evidence: required for publication

  • Tier 3 evidence: required for publication

Each task attempt ran in its own isolated sandbox pod.

What This Report Answers

The three-tier evaluation checks whether the skill:

  • is safe to use;

  • produces correct answers;

  • is discovered and activated when needed;

  • helps the agent complete the user's goal and expected workflow; and

  • avoids wasted skill and tool usage.

Results at a Glance

MeasureClaude Code (Baseline → Skill Uplift)Codex (Baseline → Skill Uplift)
Overall80.5% — baseline ran, but no comparable score was available; uplift unavailable89.1% — baseline ran, but no comparable score was available; uplift unavailable
Security100.0% → 50.0% (-50.0 points)50.0% → 100.0% (+50.0 points)
Correctness40.0% → 100.0% (+60.0 points)60.0% → 100.0% (+40.0 points)
Discoverability90.0% — baseline ran, but no comparable score was available; uplift unavailable92.7% — baseline ran, but no comparable score was available; uplift unavailable
Effectiveness31.9% → 78.8% (+46.9 points)40.0% → 70.0% (+30.0 points)
Efficiency83.5% — baseline ran, but no comparable score was available; uplift unavailable82.6% — baseline ran, but no comparable score was available; uplift unavailable

How to read this table: baseline is the same task attempted without the target skill. Scores are rounded to one decimal; threshold-adjacent values use additional precision so their displayed band matches the verdict. Uplift is derived from those displayed scores and shown in percentage points.

Example: 47.0% → 92.0% (+45.0 points) means the skill-assisted run scored 92.0%, 45.0 percentage points above its 47.0% no-skill baseline.

A partial dimension was calculated from only the available configured signals; review the detailed report before relying on it.

Token Usage

Actual Tier 3 execution usage is reported for every observed agent/case pair and both conditions.

AgentDataset caseWith skillWithout skillDeltaChangeCoverage
claude-codeAll cases1,402,8431,292,877N/AN/Askill 4/4; base 8/8
claude-codekermt-setup-001353,934463,477N/AN/Askill 1/1; base 3/3
claude-codekermt-setup-002385,745221,859+163,886+73.87%skill 1/1; base 1/1
claude-codekermt-setup-003342,340518,121N/AN/Askill 1/1; base 3/3
claude-codekermt-setup-004320,82489,420+231,404+258.78%skill 1/1; base 1/1
codexAll cases311,920568,520N/AN/Askill 4/4; base 6/6
codexkermt-setup-00175,17569,265+5,910+8.53%skill 1/1; base 1/1
codexkermt-setup-002126,981433,754N/AN/Askill 1/1; base 3/3
codexkermt-setup-00395,96152,034+43,927+84.42%skill 1/1; base 1/1
codexkermt-setup-00413,80313,467+336+2.49%skill 1/1; base 1/1
ALL AGENTSDataset aggregate1,714,7631,861,397N/AN/Askill 8/8; base 14/14

Prompt tokens include cached reads, so total tokens are prompt + completion (cached is not added twice). The Efficiency score uses (prompt - cached) + completion. N/A means the relevant trajectory counters were not available; coverage is never estimated.

Tier Status

TierPurposeStatusEvidence
Tier 1Static validationPASSED WITH OBSERVATIONS11 validator(s); 26 finding(s)
Tier 2Semantic deduplicationPASSED2 validator(s); 0 finding(s)
Tier 3Live agent evaluationPASS2 agent(s); 4 task(s)

Findings and Observations

<details> <summary>Show detailed findings and successful checks</summary>

  • MEDIUM QUALITY/quality_correctness: No documented scripts in table format (skills/kermt-setup/SKILL.md)

  • MEDIUM QUALITY/quality_correctness: Instructions don't mention 'run_script' (skills/kermt-setup/SKILL.md)

  • MEDIUM QUALITY/quality_correctness: SKILL_SPEC recommended field missing: 'metadata.author' (skills/kermt-setup/SKILL.md)

  • MEDIUM QUALITY/quality_correctness: SKILL_SPEC recommended field missing: 'metadata.tags' (skills/kermt-setup/SKILL.md)

  • MEDIUM SCHEMA/metadata_key_style: Metadata key 'risk_tier' is not kebab-case (skills/kermt-setup/SKILL.md)

  • 21 additional finding(s) are available in the full evaluation artifacts.

</details>

Scoring Methodology

<details> <summary>Show dimension definitions, source signals, and thresholds</summary>

DimensionQuestionScored signals
SecurityIs it safe to use?security (100%)
CorrectnessIs the answer correct?accuracy (100%)
DiscoverabilityWas the right skill loaded when needed?skill_execution (100%)
EffectivenessDid the skill help complete the task?goal_accuracy (50%) + behavior_check (50%)
EfficiencyDid it avoid wasted tool calls and token usage?skill_efficiency (50%) + token_efficiency (50%)
  • Dimension bands: PASS at 50% or above; NEUTRAL from 40% to below 50%; FAIL below 40%.

  • Overall Tier 3 lift: PASS at +5 points or more; FAIL at -10 points or less; values between those bands are NEUTRAL.

  • Overall verdict: PASS only when every configured dimension passes for at least one supported agent. Lift is reported as diagnostic evidence and does not override this gate.

  • The 50% attempt pass threshold is a separate per-task gate; it is not the dimension pass threshold.

  • Effectiveness is the equal-weight mean of goal completion (goal_accuracy) and expected workflow adherence (behavior_check).

  • Efficiency is 50% tool-call productivity (the backward-compatible skill_efficiency wire id) and 50% token_efficiency. Positive-case skill routing is scored under Discoverability, not Efficiency; a negative case without a routing target is N/A. N/A sources are omitted, remaining weights are renormalized, and the dimension is marked partial.

Signals present in this run:

  • security (Security): unsafe operations, secret leakage, and unauthorized access.

  • skill_execution (Skill Execution): whether the expected skill was selected, decoys were avoided, and the workflow executed.

  • skill_efficiency (Tool Productivity): tool-call productivity (legacy wire id; routing is scored under Discoverability).

  • accuracy (Accuracy): final-answer correctness against the reference answer.

  • goal_accuracy (Goal Accuracy): whether the user's goal was achieved.

  • behavior_check (Behavior Check): whether the expected workflow behavior was followed.

  • token_efficiency (Token Efficiency): actual uncached prompt plus completion usage (50% of Efficiency).

</details>

Freshness

Regenerate this benchmark when the skill, evaluation dataset, target agent/model, evaluator version, environment, or scoring policy changes.

Requirements and compatibility

Written for: Claude Code, OpenAI Codex

Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta

“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.

Needs: Needs a command-line tool, Needs Python

The author says: Requires docker, nvidia-container-toolkit, and a CUDA-capable NVIDIA GPU. Designed for Claude Code, Codex, and Nemotron.

Security

What our scanner noticed· Medium risk

  • Large base64-encoded blobs
  • Scripts that your agent may run

This skill includes scripts that your agent may run. Read them before you use it.

A static scan is not a guarantee. Skills are third-party content: review a skill before you let an agent use it.

Attribution and licence

Published by
NVIDIA
Publisher
NVIDIA (Official)
Source
NVIDIA/skills · skills/bionemo-kermt-setup · commit fce3cca
Licence
Apache License 2.0 (redistribution allowed)
  • LICENSE (added by AutoGineer from LICENSE-APACHE)
  • ATTRIBUTION.md (written by AutoGineer)
Synced

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Download ZIP

The ZIP holds the skill’s files, its licence files and an ATTRIBUTION.md. Download kermt-setup.zip