Systematic Debugging
Jesse Vincent (obra)CommunityCreated by Jesse Vincent (obra)
- Skill
- Guidelines
- Software development
- MIT
- Low risk
- Has scripts
AutoGineer summary
Written by AutoGineer from the skill’s own files, not by the author
Systematic Debugging is a disciplined approach to troubleshooting that mandates identifying the root cause of an issue before attempting any code changes. It rejects the 'guess-and-check' method, providing a structured process that moves through investigation, pattern analysis, hypothesis testing, and implementation. By enforcing strict adherence to evidence-based problem solving, this skill helps developers avoid the common pitfalls of thrashing, masking symptoms, and introducing new bugs through unverified fixes.
What it does
- Provides a four-phase workflow for investigating and resolving bugs.
- Mandates root cause identification before any fix is applied.
- Offers techniques for multi-component system diagnostics and data flow tracing.
- Defines clear stop-conditions for when to question the underlying architecture.
- Includes a reference table to counter common rationalizations for skipping process.
- Integrates with supporting techniques for tracing and defensive programming.
When to use it
- When encountering test failures, production bugs, or unexpected behavior.
- When under time pressure where guessing seems tempting.
- When previous attempts to fix an issue have failed.
- When you do not fully understand the nature of the problem.
- When an issue appears simple but persists despite quick fixes.
Advantages
- Prevents the cycle of 'fix-break-fix' by ensuring the root cause is addressed.
- Reduces total time spent on debugging by eliminating ineffective trial-and-error.
- Provides a clear, repeatable process that works across different technical domains.
- Helps identify when an issue is architectural rather than a simple coding error.
- Encourages the creation of automated tests to verify fixes.
Usage examples
- “I have a failing test in my CI pipeline, what should I do?”
- The agent will guide you through the four phases: investigating the error logs, reproducing the failure, checking recent changes, and gathering evidence at component boundaries before proposing a fix.
- “I've tried three different fixes for this bug and it still isn't working, help.”
- The agent will trigger the architectural review process, forcing a stop to further fixes and initiating a discussion on whether the underlying pattern or architecture is fundamentally flawed.
Install
Download the skill as a ZIP:
https://mp-staging.autogineer.com/agent-skills/obra/systematic-debugging/downloadUnzip it into the cross-client skills folder of your project:
mkdir -p .agents/skills && unzip systematic-debugging.zip -d .agents/skills
Documentation by Jesse Vincent (obra)
Systematic Debugging
Overview
Core principle: ALWAYS find root cause before attempting fixes. Symptom fixes are failure.
Violating the letter of this process is violating the spirit of debugging.
The Iron Law
NO FIXES WITHOUT ROOT CAUSE INVESTIGATION FIRSTIf you haven't completed Phase 1, you cannot propose fixes.
When to Use
Use for ANY technical issue:
Test failures
Bugs in production
Unexpected behavior
Performance problems
Build failures
Integration issues
Use this ESPECIALLY when:
Under time pressure (emergencies make guessing tempting)
"Just one quick fix" seems obvious
You've already tried multiple fixes
Previous fix didn't work
You don't fully understand the issue
Don't skip when:
Issue seems simple (simple bugs have root causes too)
You're in a hurry (rushing guarantees rework)
Manager wants it fixed NOW (systematic is faster than thrashing)
The Four Phases
You MUST complete each phase before proceeding to the next.
Phase 1: Root Cause Investigation
BEFORE attempting ANY fix:
Read Error Messages Carefully
Don't skip past errors or warnings
They often contain the exact solution
Read stack traces completely
Note line numbers, file paths, error codes
Reproduce Consistently
Can you trigger it reliably?
What are the exact steps?
Does it happen every time?
If not reproducible → gather more data, don't guess
Check Recent Changes
What changed that could cause this?
Git diff, recent commits
New dependencies, config changes
Environmental differences
Gather Evidence in Multi-Component Systems
WHEN system has multiple components (CI → build → signing, API → service → database):
BEFORE proposing fixes, add diagnostic instrumentation:
For EACH component boundary: - Log what data enters component - Log what data exits component - Verify environment/config propagation - Check state at each layer Run once to gather evidence showing WHERE it breaks THEN analyze evidence to identify failing component THEN investigate that specific componentExample (multi-layer system):
# Layer 1: Workflow echo "=== Secrets available in workflow: ===" echo "IDENTITY: $([ -n "${IDENTITY:-}" ] && echo SET || echo UNSET)" # Layer 2: Build script echo "=== Env vars in build script: ===" printenv IDENTITY >/dev/null 2>&1 && echo "IDENTITY in environment" || echo "IDENTITY not in environment" # Layer 3: Signing script echo "=== Keychain state: ===" security list-keychains security find-identity -v # Layer 4: Actual signing codesign --sign "$IDENTITY" --verbose=4 "$APP"This reveals: Which layer fails (secrets → workflow ✓, workflow → build ✗)
Trace Data Flow
WHEN error is deep in call stack:
See
root-cause-tracing.mdin this directory for the complete backward tracing technique.Quick version:
Where does bad value originate?
What called this with bad value?
Keep tracing up until you find the source
Fix at source, not at symptom
Phase 2: Pattern Analysis
Find the pattern before fixing:
Find Working Examples
Locate similar working code in same codebase
What works that's similar to what's broken?
Compare Against References
If implementing pattern, read reference implementation COMPLETELY
Don't skim - read every line
Understand the pattern fully before applying
Identify Differences
What's different between working and broken?
List every difference, however small
Don't assume "that can't matter"
Understand Dependencies
What other components does this need?
What settings, config, environment?
What assumptions does it make?
Phase 3: Hypothesis and Testing
Scientific method:
Form Single Hypothesis
State clearly: "I think X is the root cause because Y"
Write it down
Be specific, not vague
Test Minimally
Make the SMALLEST possible change to test hypothesis
One variable at a time
Don't fix multiple things at once
Verify Before Continuing
Did it work? Yes → Phase 4
Didn't work? Form NEW hypothesis
DON'T add more fixes on top
When You Don't Know
Say "I don't understand X"
Don't pretend to know
Ask for help
Research more
Phase 4: Implementation
Fix the root cause, not the symptom:
Create Failing Test Case
Simplest possible reproduction
Automated test if possible
One-off test script if no framework
MUST have before fixing
Use the
superpowers:test-driven-developmentskill for writing proper failing tests
Implement Single Fix
Address the root cause identified
ONE change at a time
No "while I'm here" improvements
No bundled refactoring
Verify Fix
Test passes now?
No other tests broken?
Issue actually resolved?
Use the
superpowers:verification-before-completionskill before claiming success
If Fix Doesn't Work
STOP
Count: How many fixes have you tried?
If < 3: Return to Phase 1, re-analyze with new information
If ≥ 3: STOP and question the architecture (step 5 below)
DON'T attempt Fix #4 without architectural discussion
If 3+ Fixes Failed: Question Architecture
Pattern indicating architectural problem:
Each fix reveals new shared state/coupling/problem in different place
Fixes require "massive refactoring" to implement
Each fix creates new symptoms elsewhere
STOP and question fundamentals:
Is this pattern fundamentally sound?
Are we "sticking with it through sheer inertia"?
Should we refactor architecture vs. continue fixing symptoms?
Discuss with your human partner before attempting more fixes
This is NOT a failed hypothesis - this is a wrong architecture.
Red Flags - STOP and Follow Process
If you catch yourself thinking:
"Quick fix for now, investigate later"
"Just try changing X and see if it works"
"Add multiple changes, run tests"
"Skip the test, I'll manually verify"
"It's probably X, let me fix that"
"I don't fully understand but this might work"
"Pattern says X but I'll adapt it differently"
"Here are the main problems: [lists fixes without investigation]"
Proposing solutions before tracing data flow
"One more fix attempt" (when already tried 2+)
Each fix reveals new problem in different place
ALL of these mean: STOP. Return to Phase 1.
If 3+ fixes failed: Question the architecture (see Phase 4.5)
your human partner's Signals You're Doing It Wrong
Watch for these redirections:
"Is that not happening?" - You assumed without verifying
"Will it show us...?" - You should have added evidence gathering
"Stop guessing" - You're proposing fixes without understanding
"Ultra-think this" - Question fundamentals, not just symptoms
"We're stuck?" (frustrated) - Your approach isn't working
When you see these: STOP. Return to Phase 1.
Common Rationalizations
| Excuse | Reality |
|---|---|
| "Issue is simple, don't need process" | Simple issues have root causes too. Process is fast for simple bugs. |
| "Emergency, no time for process" | Systematic debugging is FASTER than guess-and-check thrashing. |
| "Just try this first, then investigate" | First fix sets the pattern. Do it right from the start. |
| "I'll write test after confirming fix works" | Untested fixes don't stick. Test first proves it. |
| "Multiple fixes at once saves time" | Can't isolate what worked. Causes new bugs. |
| "Reference too long, I'll adapt the pattern" | Partial understanding guarantees bugs. Read it completely. |
| "I see the problem, let me fix it" | Seeing symptoms ≠ understanding root cause. |
| "One more fix attempt" (after 2+ failures) | 3+ failures = architectural problem. Question pattern, don't fix again. |
Quick Reference
| Phase | Key Activities | Success Criteria |
|---|---|---|
| 1. Root Cause | Read errors, reproduce, check changes, gather evidence | Understand WHAT and WHY |
| 2. Pattern | Find working examples, compare | Identify differences |
| 3. Hypothesis | Form theory, test minimally | Confirmed or new hypothesis |
| 4. Implementation | Create test, fix, verify | Bug resolved, tests pass |
When Process Reveals "No Root Cause"
If systematic investigation reveals issue is truly environmental, timing-dependent, or external:
You've completed the process
Document what you investigated
Implement appropriate handling (retry, timeout, error message)
Add monitoring/logging for future investigation
But: 95% of "no root cause" cases are incomplete investigation.
Supporting Techniques
These techniques are part of systematic debugging and available in this directory:
root-cause-tracing.md- Trace bugs backward through call stack to find original triggerdefense-in-depth.md- Add validation at multiple layers after finding root causecondition-based-waiting.md- Replace arbitrary timeouts with condition polling
Files
- ATTRIBUTION.mdAdded by AutoGineer873 B
- LICENSELicence file added by AutoGineer1.0 KiB
- SKILL.md9.3 KiB
- condition-based-waiting-example.tsScript4.9 KiB
- condition-based-waiting.md3.4 KiB
- defense-in-depth.md3.6 KiB
- find-polluter.shScript1.9 KiB
- root-cause-tracing.md5.2 KiB
LICENSE
MIT License Copyright (c) 2025 Jesse Vincent Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Requirements and compatibility
Works with: Claude Code, Claude apps, OpenAI Codex, GitHub Copilot, Cursor, Gemini CLI, Kiro, OpenCode, Goose, Amp, Roo Code, JetBrains Junie, Factory Droid, Devin (ex-Windsurf), Mistral Vibe, OpenHands, Letta
“Works with” means the tool reads the open Agent Skills format; a skill written for one tool may use features others lack.
Needs: Needs Node.js
Security
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Attribution and licence
- Created by
- Jesse Vincent (obra)
- Publisher
- Jesse Vincent (obra) (Community)
- Source
- obra/superpowers · skills/systematic-debugging · commit 22f0b46
- Licence
- MIT License (redistribution allowed)
- LICENSE (added by AutoGineer from LICENSE)
- ATTRIBUTION.md (written by AutoGineer)
- Synced
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