Agent Skills

Trusted skills for AI agents from official vendors and established maintainers. Every skill is attributed to its author, scanned, and comes with install steps for your AI tool.

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378 skills

  • Imaging Data Commons

    K-Dense· Community

    Query, filter, and download public cancer imaging datasets from the NCI Imaging Data Commons.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Pylabrobot

    K-Dense· Community

    Develop and simulate lab automation protocols using the PyLabRobot 0.2.2 framework.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Etetoolkit

    K-Dense· Community

    A Python toolkit for analyzing, manipulating, and visualizing phylogenetic and hierarchical trees using ETE 4.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    GPL-3.0-or-laterLow riskHas scriptsGitHub stars of the source repository56.4k
  • Pkpd Modeling

    K-Dense· Community

    A comprehensive toolkit for pharmacokinetic and pharmacodynamic modeling, simulation, and data analysis.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Biopython

    K-Dense· Community

    A comprehensive Python library for computational molecular biology, sequence analysis, and bioinformatics workflows.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskGitHub stars of the source repository56.4k
  • Qiime2 Amplicon

    K-Dense· Community

    Automated QIIME 2 workflow for processing paired-end 16S amplicon sequencing data with provenance tracking.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Ontology Term Resolution

    K-Dense· Community

    Resolves and validates scientific labels against standard ontologies using EBI OLS4, Bioregistry, and other research-focused identifier services.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Waypoint Bio

    K-Dense· Community

    A toolkit for working with Outpost Bio's Waypoint microbiome foundation models and the Compass benchmark.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Sympy

    K-Dense· Community

    Perform exact symbolic mathematics, calculus, and equation solving using the SymPy Python library.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskGitHub stars of the source repository56.4k
  • Query and analyze public pathogen genomic surveillance data from GenSpectrum and Pathoplexus LAPIS deployments.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Pydeseq2

    K-Dense· Community

    Perform bulk RNA-seq differential expression analysis using PyDESeq2 with support for GLMs, Wald tests, and LFC shrinkage.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Research Lookup

    K-Dense· Community

    Compiles verified scholarly evidence and creates a structured research packet for scientific manuscripts.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Nextflow

    K-Dense· Community

    Build, run, and debug reproducible data pipelines using Nextflow DSL2 and nf-core workflows.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Apache-2.0Low riskGitHub stars of the source repository56.4k
  • Pycalphad

    K-Dense· Community

    Automated equilibrium phase calculations for thermodynamic TDB databases using pycalphad.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Clinical Decision Support

    K-Dense· Community

    A research-only toolkit for documenting and validating clinical decision-support evaluation, governance, and evidence-profile artifacts.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Benchling Integration

    K-Dense· Community

    Integrate with Benchling using the Python SDK and REST API to automate lab data, registry entities, inventory, and ELN workflows.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskGitHub stars of the source repository56.4k
  • Scientific Schematics

    K-Dense· Community

    Generates scientific diagram drafts using Nano Banana 2 AI with smart iterative refinement. Uses Gemini 3.7 Flash for quality review. Refines when the review requests improvement, with at most two generations. Specialized in neural network architectures, system diagrams, flowcharts, biological pathways, and complex scientific visualizations.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Pennylane

    K-Dense· Community

    Build, differentiate, and optimize quantum circuits and hybrid quantum-classical models using PennyLane.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskGitHub stars of the source repository56.4k
  • Mageck

    K-Dense· Community

    A workflow for analyzing pooled CRISPR screens using MAGeCK to identify gene hits and perform quality control.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Phylogenetics

    K-Dense· Community

    Builds and analyzes phylogenetic trees using MAFFT multiple sequence alignment, IQ-TREE maximum likelihood with ModelFinder and branch support, and FastTree approximate inference. Uses ETE3 for tree summaries and visualization. Applies to homologous nucleotide or protein sequences, microbial gene trees, protein families, and cautiously interpreted dated phylogenies.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    Link-onlyLow riskHas scriptsGitHub stars of the source repository56.4k
  • Hypogenic

    K-Dense· Community

    Provides planning, auditing, and configuration tools for the HypoGeniC package to assist in LLM-based hypothesis generation from labeled text datasets.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Nmrglue

    K-Dense· Community

    A reproducible workflow for processing 1D NMR free-induction decays into phased spectra and integrated regions.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Pytdc

    K-Dense· Community

    Provides workflows for accessing and evaluating therapeutic machine learning datasets and benchmarks via PyTDC.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k
  • Geomaster

    K-Dense· Community

    A comprehensive framework for geospatial research, covering remote sensing, GIS, spatial statistics, and Earth observation data processing.

    Science and researchClaude CodeClaude appsOpenAI Codex+14 more
    MITLow riskHas scriptsGitHub stars of the source repository56.4k